Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.3e-166 589.7 318 100.0
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.4e-160 568.9 318 96.2
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 5.9e-159 564.3 318 95.3
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-157 559.3 318 93.1
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.5e-157 558.9 318 93.4
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.5e-157 557.8 318 95.0
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-156 556.6 318 95.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 3.6e-156 555.1 318 94.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 4.1e-144 515.0 318 88.4
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 3.5e-143 511.9 318 88.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.7e-142 509.6 281 97.5
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 3.5e-135 485.3 319 80.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.1e-132 476.1 318 79.2
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.1e-131 473.8 318 78.3
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.5e-130 469.9 318 78.9
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 7.5e-130 467.6 318 78.0
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 7.5e-130 467.6 318 78.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 78.0
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.9e-129 464.9 318 77.7
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.1e-128 463.8 318 76.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.1e-128 463.8 318 76.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.4e-128 463.4 318 77.4
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 7.0e-128 461.1 318 78.0
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.7e-127 459.1 318 76.1
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.7e-127 459.1 318 76.4
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.0e-126 457.2 317 76.7
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.0e-126 455.7 318 76.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.1e-125 453.8 318 77.0
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.3e-125 452.2 318 75.5
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 4.3e-125 451.8 318 75.5
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 7.3e-125 451.1 362 69.3
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 6.2e-124 448.0 318 73.9
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 6.2e-124 448.0 318 75.2
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 6.2e-124 448.0 318 75.2
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.4e-123 446.8 318 74.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.4e-123 446.8 318 74.5
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 74.5
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 75.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.2e-122 443.7 318 73.6
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.2e-122 443.7 318 73.9
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.2e-122 443.7 318 74.8
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.2e-122 443.7 318 74.8
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 73.3
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 74.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.0e-122 443.0 318 75.2
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.0e-122 443.0 318 73.6
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.6e-122 442.6 318 75.2
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 4.4e-122 441.8 318 73.9
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 9.9e-122 440.7 318 73.9
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.3e-121 440.3 318 74.2
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.7e-121 439.9 318 74.2
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.2e-121 439.5 318 74.5
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.9e-121 439.1 318 72.6
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 8.3e-121 437.6 318 74.2
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.1e-120 437.2 318 74.2
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.9e-120 436.4 319 73.0
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.9e-120 436.4 318 73.6
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.9e-120 436.4 318 73.6
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 4.1e-120 435.3 318 72.6
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 4.1e-120 435.3 318 73.0
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.4e-120 434.9 318 73.3
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 7.1e-120 434.5 318 73.9
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.5e-119 432.2 318 73.3
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 6.0e-119 431.4 318 73.9
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.3e-118 430.3 318 73.3
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 3.0e-118 429.1 318 73.9
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 5.1e-118 428.3 318 73.0
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 8.6e-118 427.6 321 72.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 3.3e-117 425.6 318 71.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 9.5e-117 424.1 319 71.2
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 9.5e-117 424.1 319 72.7
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 9.5e-117 424.1 315 71.7
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 9.5e-117 424.1 318 71.4
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 71.4
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.6e-116 423.3 318 70.8
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.8e-116 422.5 318 70.8
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.1e-115 420.6 318 70.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.8e-115 419.9 317 70.7
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.4e-115 419.5 318 70.1
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.1e-115 419.1 318 71.4
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.5e-114 416.8 318 71.1
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.4e-114 415.6 319 71.5
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 4.4e-114 415.2 319 70.2
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.8e-114 414.8 318 69.5
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 5.8e-114 414.8 318 69.8
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 9.9e-114 414.1 318 72.3
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 3.2e-112 409.1 321 68.8
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.8e-111 404.4 353 63.5
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 2.3e-110 402.9 318 68.9
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.1e-109 400.6 318 68.6
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.5e-109 399.4 318 67.3
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 7.3e-109 397.9 319 69.0
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 9.6e-109 397.5 319 68.7
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 9.6e-109 397.5 321 67.0
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 2.8e-108 396.0 302 70.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.6e-108 395.6 320 67.8
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.7e-108 395.2 319 69.9
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.8e-107 393.3 293 73.0
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.4e-107 392.9 302 70.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 4.0e-107 392.1 302 70.9
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 5.2e-107 391.7 280 75.4
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 6.9e-107 391.3 286 74.1
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.6e-106 389.4 317 65.0
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 3.4e-106 389.0 305 70.2
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.7e-103 379.4 318 68.9
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 8.7e-102 374.4 294 69.0
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.5e-101 372.9 294 69.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 7.3e-101 371.3 287 68.6
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.3e-100 370.5 320 64.1
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.3e-100 370.5 270 71.9
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.6e-100 369.0 391 60.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.4e-99 367.1 256 74.6
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.4e-98 362.5 270 70.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.5e-95 352.4 264 72.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.0e-94 350.9 318 62.6
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.0e-94 349.4 319 62.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 5.1e-94 348.6 318 63.8
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 6.7e-94 348.2 318 65.4
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 5.6e-93 345.1 320 59.7
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 4.5e-90 335.5 270 65.9
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 8.4e-89 331.3 242 71.1
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.3e-84 317.4 230 74.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.0e-81 307.8 318 55.0
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.9e-77 293.5 229 66.8
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.1e-71 273.5 748 31.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.3e-70 270.0 321 50.5
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 9.1e-67 258.1 316 50.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 8.5e-65 251.5 320 45.0
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.0e-61 240.4 181 78.5
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 5.0e-57 225.7 295 47.1
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-55 221.1 125 98.4
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 6.3e-52 208.8 192 64.6
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 1.7e-49 200.7 160 72.5
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.5e-49 198.7 150 74.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 4.0e-46 189.5 272 48.2
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 5.5e-40 169.1 120 80.8
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 5.7e-37 159.1 151 62.3
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.4e-35 154.5 252 41.3
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.1e-35 152.9 121 62.8
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.5e-32 143.7 278 41.0
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.0e-30 138.3 311 32.8
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.8e-30 135.6 112 66.1
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.5e-29 134.4 91 73.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 5.9e-26 122.5 133 57.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 2.3e-25 120.6 93 69.9
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-24 118.2 99 61.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.9e-24 117.5 143 57.3
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.0e-23 112.1 109 61.5
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 8.9e-22 108.6 89 59.6
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 7.3e-16 89.0 67 65.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.2e-15 88.2 397 27.0
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.0e-14 83.2 57 75.4
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 8.6e-09 65.5 142 35.9
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-08 65.1 92 45.7
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.4e-06 58.2 42 61.9
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 3.1e-06 57.0 90 41.1


User provided reference genes

Program Settings