Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 1.9e-40 168.7 83 100.0
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 3.3e-37 157.9 83 94.0
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 2.9e-33 144.8 82 85.4
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 9.4e-32 139.8 85 83.5
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 7.9e-31 136.7 83 83.1
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 2.6e-29 131.7 83 83.1
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 2.2e-25 118.6 81 70.4
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 8.5e-25 116.7 82 73.2
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 1.9e-24 115.5 83 68.7
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 4.7e-23 110.9 78 71.8
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 5.2e-22 107.5 74 73.0
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 8.8e-22 106.7 78 66.7
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 4.4e-21 104.4 71 71.8
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 5.7e-21 104.0 78 66.7
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 7.5e-21 103.6 85 65.9
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 7.5e-21 103.6 79 63.3
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 7.5e-21 103.6 73 72.6
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 9.7e-21 103.2 80 62.5
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 1.3e-20 102.8 81 63.0
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 2.2e-20 102.1 77 70.1
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 2.8e-20 101.7 81 65.4
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 6.3e-20 100.5 74 68.9
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 6.3e-20 100.5 78 64.1
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 1.1e-19 99.8 68 70.6
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 1.8e-19 99.0 85 62.4
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 2.4e-19 98.6 81 61.7
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 2.4e-19 98.6 49 98.0
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 5.3e-19 97.4 82 57.3
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 5.3e-19 97.4 82 59.8
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 5.3e-19 97.4 71 69.0
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 5.3e-19 97.4 81 60.5
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 5.3e-19 97.4 81 60.5
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 7.0e-19 97.1 85 61.2
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 9.1e-19 96.7 71 67.6
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 9.1e-19 96.7 75 68.0
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 9.1e-19 96.7 75 68.0
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 9.1e-19 96.7 78 62.8
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 1.2e-18 96.3 78 65.4
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 1.2e-18 96.3 75 66.7
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 1.2e-18 96.3 72 68.1
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.6e-18 95.9 78 60.3
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 1.6e-18 95.9 71 67.6
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.6e-18 95.9 71 69.0
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 2.0e-18 95.5 69 68.1
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 2.0e-18 95.5 75 66.7
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 3.5e-18 94.7 75 65.3
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 3.5e-18 94.7 75 65.3
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 4.5e-18 94.4 82 58.5
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 5.9e-18 94.0 72 63.9
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 7.7e-18 93.6 64 71.9
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 1.0e-17 93.2 69 65.2
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 1.3e-17 92.8 74 63.5
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 1.3e-17 92.8 71 66.2
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 1.7e-17 92.4 72 63.9
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 3.8e-17 91.3 63 69.8
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 3.8e-17 91.3 55 80.0
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 3.8e-17 91.3 71 64.8
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 8.5e-17 90.1 82 58.5
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 8.5e-17 90.1 72 65.3
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 1.1e-16 89.7 71 64.8
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 1.1e-16 89.7 79 55.7
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 2.5e-16 88.6 75 58.7
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 4.2e-16 87.8 58 70.7
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 5.5e-16 87.4 83 49.4
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 5.5e-16 87.4 70 61.4
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 1.2e-15 86.3 81 55.6
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 2.1e-15 85.5 62 62.9
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 2.1e-15 85.5 62 62.9
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 2.7e-15 85.1 79 51.9
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 6.1e-15 84.0 61 63.9
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 6.1e-15 84.0 63 60.3
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 1.0e-14 83.2 65 64.6
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 1.4e-14 82.8 61 55.7
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 4.0e-14 81.3 56 75.0
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 5.2e-14 80.9 58 65.5
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 6.8e-14 80.5 52 73.1
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 8.8e-14 80.1 60 63.3
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 4.4e-13 77.8 76 57.9
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 2.2e-12 75.5 53 69.8
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 2.8e-12 75.1 53 58.5
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 1.8e-11 72.4 46 71.7
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 4.1e-11 71.2 57 59.6
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 5.9e-10 67.4 58 62.1
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 5.9e-10 67.4 46 71.7
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 2.2e-09 65.5 52 61.5
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 2.9e-09 65.1 38 76.3
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 2.9e-09 65.1 51 54.9
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 4.2e-08 61.2 41 73.2
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 9.4e-08 60.1 49 61.2
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 2.1e-07 58.9 51 56.9
Oeu060284.1 Olea europaea HOM05D007707 ORTHO05D009711 2.7e-07 58.5 82 46.3
PSO700G0322 Papaver somniferum HOM05D066428 ORTHO05D009711 3.6e-07 58.2 66 47.0
PSO170G0729 Papaver somniferum HOM05D066428 ORTHO05D009711 4.7e-07 57.8 66 47.0


User provided reference genes

Program Settings