Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.0e-157 558.5 297 100.0
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.8e-152 541.6 298 97.3
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.0e-128 461.5 298 86.2
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 9.0e-77 291.2 320 55.9
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.2e-75 286.6 320 55.6
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 3.5e-73 279.3 305 58.7
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 7.4e-71 271.6 320 53.8
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.3e-69 265.4 320 53.1
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 6.9e-69 265.0 317 53.0
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.2e-62 243.4 320 50.3
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 9.1e-61 238.0 306 49.7
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.4e-60 236.1 306 50.3
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.4e-60 236.1 306 50.3
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.9e-59 233.0 306 50.3
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.6e-57 227.3 306 49.0
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 3.6e-57 226.1 303 49.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 1.0e-56 224.6 305 49.2
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.4e-56 224.2 308 50.3
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.7e-54 217.2 306 48.0
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 4.8e-54 215.7 305 46.9
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 3.1e-53 213.0 321 45.8
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.5e-52 210.7 305 46.6
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.7e-51 207.2 319 45.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.2e-51 206.8 307 47.9
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.5e-51 205.3 305 45.6
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.2e-49 201.1 322 44.4
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.6e-49 199.5 317 44.5
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 8.0e-49 198.4 317 43.5
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 9.7e-47 191.4 305 44.9
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 7.0e-45 185.3 302 45.4
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 7.0e-45 185.3 302 45.4
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.2e-44 184.5 312 42.3
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.3e-43 181.0 303 43.6
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 6.5e-43 178.7 333 39.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.9e-42 177.2 339 40.7
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.9e-42 177.2 320 42.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 5.5e-42 175.6 330 42.1
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.4e-40 171.0 326 40.8
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 5.2e-40 169.1 318 41.2
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 6.8e-40 168.7 325 41.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 8.8e-40 168.3 311 42.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.2e-39 167.9 317 42.3
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.4e-39 166.0 298 41.3
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.4e-39 166.0 298 41.3
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 5.7e-39 165.6 317 42.3
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 7.5e-39 165.2 329 41.0
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 7.5e-39 165.2 321 39.6
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 9.7e-39 164.9 303 41.9
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.2e-38 163.7 324 39.8
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.8e-38 163.3 316 38.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.8e-38 163.3 316 38.9
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.8e-38 163.3 331 38.7
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.8e-38 162.5 318 40.9
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 6.3e-38 162.2 336 39.0
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 8.3e-38 161.8 324 39.5
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.3e-38 161.8 316 38.3
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.1e-37 161.4 326 40.8
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.4e-37 160.2 317 42.0
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.1e-37 159.5 319 39.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.3e-37 159.1 319 39.2
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.1e-37 158.3 308 41.6
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 9.1e-37 158.3 318 39.3
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.6e-36 157.5 318 39.0
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.6e-36 157.5 318 39.0
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.6e-36 157.5 318 39.0
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.6e-36 157.5 319 39.5
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.6e-36 157.5 220 50.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 7.7e-36 155.2 319 39.2
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.0e-35 154.8 318 38.4
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 3.8e-35 152.9 311 38.9
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 3.8e-35 152.9 311 39.2
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 8.5e-35 151.8 314 40.1
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 8.5e-35 151.8 317 39.4
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.1e-34 151.4 315 39.0
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.1e-34 151.4 305 38.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.9e-34 150.6 326 38.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 3.2e-34 149.8 322 38.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 9.4e-34 148.3 316 38.9
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 9.4e-34 148.3 316 37.3
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 8.0e-33 145.2 312 38.5
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.0e-32 144.8 315 37.5
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 2.3e-32 143.7 324 38.0
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 3.0e-32 143.3 317 40.4
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 5.2e-32 142.5 303 40.6
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 6.8e-32 142.1 314 38.2
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.5e-31 141.0 309 38.2
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.6e-31 140.2 321 35.5
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.6e-31 140.2 333 37.2
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.6e-31 140.2 335 37.0
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.7e-31 139.0 311 36.7
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 9.8e-31 138.3 323 36.2
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.7e-30 137.5 327 37.3
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.7e-30 137.5 314 36.9
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.2e-30 137.1 308 39.3
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 2.2e-30 137.1 296 38.9
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.8e-30 136.7 337 36.5
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.7e-30 136.3 305 34.8
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 6.3e-30 135.6 305 37.7
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 4.1e-29 132.9 312 38.1
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 5.4e-29 132.5 307 38.1
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.2e-28 131.3 305 35.7
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 5.9e-28 129.0 315 36.5
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 7.7e-28 128.6 319 36.1
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.1e-26 124.8 313 38.0
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 2.5e-26 123.6 334 35.6
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.5e-26 122.5 212 40.6
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 7.2e-26 122.1 302 36.4
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.1e-25 120.6 313 37.4
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.8e-25 120.2 316 34.5
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 8.0e-25 118.6 178 47.8
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.0e-24 118.2 310 36.1
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.0e-24 118.2 138 52.2
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.8e-24 115.5 327 33.9
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 8.9e-24 115.2 300 38.3
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.6e-23 113.6 314 33.4
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 4.4e-23 112.8 304 34.2
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 4.4e-23 112.8 314 33.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.4e-23 112.8 317 36.6
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 6.3e-22 109.0 295 35.9
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.1e-21 108.2 317 35.6
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 2.4e-21 107.1 319 32.6
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.2e-21 106.7 318 34.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 7.0e-21 105.5 298 35.2
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 9.2e-21 105.1 311 34.7
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 9.2e-21 105.1 314 32.8
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.7e-20 103.6 235 41.7
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 3.5e-20 103.2 318 34.3
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.7e-19 100.9 288 35.4
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.3e-19 100.5 288 35.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.9e-19 100.1 295 34.9
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.9e-18 97.4 312 33.7
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 2.5e-18 97.1 242 37.6
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 3.3e-18 96.7 290 34.5
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.3e-18 96.7 304 33.2
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.8e-17 93.6 319 35.4
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 6.1e-17 92.4 295 32.9
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 6.1e-17 92.4 295 32.9
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 4.0e-16 89.7 293 32.4
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-15 87.8 291 31.3
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.5e-15 87.8 308 33.8
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.9e-13 80.9 182 40.1
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.9e-13 80.9 144 43.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.4e-13 80.5 322 32.0
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 9.2e-13 78.6 314 29.0
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.6e-12 77.8 307 31.6
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 2.0e-12 77.4 310 32.3
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 6.6e-11 72.4 245 34.3
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 8.6e-11 72.0 188 36.7
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 8.6e-11 72.0 287 28.6
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-10 71.2 233 33.0
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 9.5e-10 68.6 287 29.3
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 2.1e-09 67.4 177 37.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.8e-08 64.3 171 36.8
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.8e-08 64.3 302 29.8
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.4e-07 60.1 161 36.6
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 7.5e-07 58.9 164 37.2
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 3.7e-06 56.6 140 37.9


User provided reference genes

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