Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.0e-228 795.4 406 100.0
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 3.6e-225 784.6 406 98.3
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 6.9e-221 770.4 406 96.6
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 5.9e-204 714.1 403 89.6
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 5.7e-191 671.0 412 83.3
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.7e-190 669.5 406 82.5
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.2e-190 669.1 406 82.0
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 5.1e-155 551.6 402 70.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.9e-146 523.1 394 70.1
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 7.3e-146 521.2 415 65.3
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.1e-145 519.6 397 69.0
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.8e-145 519.2 400 67.5
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.2e-140 503.8 396 67.7
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.2e-140 503.8 394 67.3
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.5e-138 496.9 392 66.1
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 2.4e-136 489.6 407 63.4
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.4e-136 489.6 400 65.0
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.2e-132 477.2 401 62.6
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 2.1e-132 476.5 393 64.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 3.5e-132 475.7 401 62.6
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.3e-131 473.0 402 62.7
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 8.1e-129 464.5 398 64.1
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.4e-128 463.8 409 61.1
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 4.0e-128 462.2 396 62.1
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.3e-128 461.8 394 62.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.0e-127 459.9 389 62.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.3e-126 457.2 402 61.7
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 2.2e-126 456.4 389 61.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.2e-126 456.4 398 61.1
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 6.4e-126 454.9 408 58.8
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 5.5e-125 451.8 402 60.7
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.6e-124 450.3 395 60.3
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 2.1e-124 449.9 378 65.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 2.1e-124 449.9 395 60.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 2.7e-124 449.5 400 59.5
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.7e-124 449.5 405 61.2
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.3e-123 446.4 395 60.5
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 3.9e-123 445.7 397 61.2
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 8.7e-123 444.5 408 59.8
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.7e-123 444.5 392 60.7
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.1e-122 444.1 412 60.4
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.1e-122 444.1 412 60.4
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 1.9e-122 443.4 398 59.0
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 9.6e-122 441.0 404 60.9
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-121 440.3 407 59.7
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.6e-121 440.3 396 57.8
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.1e-121 439.9 412 60.0
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.8e-121 438.7 409 57.0
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 8.2e-121 438.0 402 59.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.4e-120 437.2 394 59.6
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-120 436.8 412 60.0
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 4.0e-120 435.6 392 58.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 9.0e-120 434.5 394 58.9
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 9.0e-120 434.5 398 59.3
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.5e-119 433.7 409 58.4
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.0e-119 433.3 409 57.0
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.0e-119 433.3 393 60.6
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-119 432.6 412 59.2
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-119 432.6 412 59.2
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.0e-118 431.0 463 53.1
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.3e-118 430.6 397 58.7
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.4e-117 427.2 396 59.3
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.4e-117 427.2 394 56.9
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.9e-117 426.8 393 58.3
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.9e-117 426.8 391 58.6
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.9e-117 426.8 399 58.1
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 7.1e-117 424.9 444 55.6
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 2.7e-116 422.9 394 58.1
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.5e-116 422.5 392 56.1
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 4.6e-116 422.2 390 58.5
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 7.9e-116 421.4 398 58.3
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 7.9e-116 421.4 394 58.1
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 3.0e-115 419.5 401 57.6
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 3.9e-115 419.1 392 57.9
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.9e-115 419.1 393 56.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 5.7e-114 415.2 397 58.2
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.9e-112 408.3 427 54.1
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 6.9e-112 408.3 414 56.5
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 6.5e-110 401.7 418 54.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.5e-109 399.8 391 57.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 4.2e-109 399.1 388 55.2
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.2e-108 397.5 393 57.3
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.6e-108 397.1 389 57.3
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.0e-107 394.4 367 58.9
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.5e-106 390.6 382 56.8
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.3e-106 389.4 394 55.8
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.7e-105 387.1 421 52.5
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.8e-105 385.6 412 53.2
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.8e-104 383.6 411 52.1
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.2e-103 380.9 392 54.6
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.5e-103 379.0 295 66.1
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.7e-103 378.3 411 51.6
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.7e-102 377.1 390 53.6
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.2e-100 370.9 381 54.9
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 1.6e-100 370.5 381 55.4
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.6e-100 370.5 395 54.4
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 1.6e-100 370.5 420 50.7
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.1e-100 370.2 381 54.9
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.7e-100 369.8 395 53.2
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 8.8e-99 364.8 402 52.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.1e-96 357.8 403 47.9
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.5e-95 354.0 391 52.4
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.9e-93 347.1 316 60.8
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.0e-92 341.7 461 47.1
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 1.8e-88 330.5 288 59.4
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.2e-85 319.7 268 61.2
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.2e-84 317.8 451 43.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.8e-83 313.9 242 67.4
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 5.2e-83 312.4 390 48.2
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 3.7e-81 306.2 345 51.0
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 4.5e-79 299.3 377 48.0
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 7.7e-79 298.5 399 48.9
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 3.8e-78 296.2 400 42.5
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 9.8e-74 281.6 416 42.1
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.3e-73 278.9 404 44.1
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-72 277.7 408 44.4
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 5.2e-67 259.2 378 43.9
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 4.5e-63 246.1 412 37.4
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 5.9e-63 245.7 215 60.9
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 4.7e-60 236.1 437 34.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 5.8e-58 229.2 464 34.7
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.0e-54 216.1 267 44.9
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.5e-53 213.8 176 62.5
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 3.6e-52 209.9 190 56.3
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 3.6e-52 209.9 306 44.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 6.6e-46 189.1 189 57.1
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-40 171.0 170 54.7
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 6.2e-36 156.0 157 53.5
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.4e-35 154.8 177 49.2
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 7.1e-32 142.5 110 63.6
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 6.0e-31 139.4 175 50.3
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.1e-27 127.1 279 33.3
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 1.2e-26 125.2 104 59.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 2.4e-24 117.5 181 46.4
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-19 101.7 153 39.2
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.4e-18 97.1 89 56.2
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 4.5e-18 96.7 65 70.8
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.2e-15 88.6 106 49.1
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-14 85.5 85 51.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.3e-12 78.6 53 71.7
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 2.1e-12 77.8 111 45.9
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 2.1e-12 77.8 111 45.9
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 6.9e-11 72.8 63 65.1
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.9e-11 72.8 63 65.1
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 9.0e-11 72.4 155 37.4


User provided reference genes

Program Settings