Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 1.1e-136 490.0 244 100.0
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 1.6e-127 459.5 244 93.4
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 2.3e-118 429.1 244 86.9
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 6.6e-118 427.6 244 86.9
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 8.7e-118 427.2 244 86.1
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 1.7e-113 412.9 244 84.4
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.2e-82 310.5 247 64.4
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 1.4e-80 303.5 151 99.3
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 4.2e-80 302.0 254 61.8
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.1e-79 299.7 247 62.8
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 2.1e-79 299.7 248 60.1
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 3.0e-78 295.8 247 59.9
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 8.8e-78 294.3 253 59.7
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 8.8e-78 294.3 246 60.2
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.9e-77 293.1 247 59.9
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 5.7e-77 291.6 249 61.8
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 5.7e-77 291.6 243 60.1
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 1.7e-76 290.0 249 57.8
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 3.7e-76 288.9 261 58.2
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 6.3e-76 288.1 257 57.6
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.1e-75 287.3 195 70.8
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.4e-75 287.0 246 59.8
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 1.4e-75 287.0 253 58.1
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 9.1e-75 284.3 246 59.3
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 9.1e-75 284.3 195 69.7
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 4.5e-74 282.0 237 59.5
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 4.5e-74 282.0 252 58.3
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 1.0e-73 280.8 244 58.6
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 2.2e-73 279.6 228 63.2
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 2.2e-73 279.6 249 57.4
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.2e-73 279.6 246 58.5
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 6.5e-73 278.1 246 58.5
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 1.4e-72 276.9 243 58.4
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 2.5e-72 276.2 251 57.0
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 3.2e-72 275.8 197 67.5
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 9.4e-72 274.2 255 55.7
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 1.6e-71 273.5 205 63.4
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.6e-71 273.5 216 63.0
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 1.6e-71 273.5 249 57.8
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 2.1e-71 273.1 200 65.0
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.1e-71 273.1 246 58.1
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 2.3e-70 269.6 246 57.3
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 3.0e-70 269.2 229 59.4
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 3.9e-70 268.9 203 63.1
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 5.1e-70 268.5 229 59.4
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 5.1e-70 268.5 250 57.6
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 1.1e-69 267.3 253 54.2
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 1.5e-69 266.9 252 52.4
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 1.5e-69 266.9 246 56.9
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 2.6e-69 266.2 246 56.5
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 3.3e-69 265.8 253 53.8
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 3.3e-69 265.8 251 55.0
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 4.4e-69 265.4 196 62.8
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 4.4e-69 265.4 244 56.1
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 4.4e-69 265.4 256 55.1
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 5.7e-69 265.0 243 54.7
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 7.4e-69 264.6 185 67.0
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 1.3e-68 263.8 253 53.8
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.7e-68 263.5 247 56.7
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 1.7e-68 263.5 186 65.6
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 2.2e-68 263.1 186 65.6
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 3.7e-68 262.3 224 57.6
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 1.4e-67 260.4 236 56.4
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 1.8e-67 260.0 252 53.2
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 5.3e-67 258.5 201 59.2
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 7.0e-67 258.1 199 61.3
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 9.1e-67 257.7 216 58.3
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 2.0e-66 256.5 172 71.5
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 3.4e-66 255.8 193 61.7
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 1.0e-65 254.2 184 64.1
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 2.2e-65 253.1 240 55.4
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 8.5e-65 251.1 197 59.4
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.1e-64 250.8 245 55.1
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 1.1e-64 250.8 241 49.8
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 1.6e-63 246.9 201 57.7
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 2.7e-63 246.1 239 54.8
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 1.8e-62 243.4 249 53.0
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 3.9e-62 242.3 203 55.2
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 6.7e-62 241.5 250 50.8
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 9.1e-59 231.1 221 55.2
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 4.5e-58 228.8 197 56.9
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 5.9e-58 228.4 235 51.1
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 2.9e-57 226.1 230 53.0
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 3.8e-57 225.7 238 50.4
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 8.5e-57 224.6 221 51.1
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 8.5e-57 224.6 213 54.9
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 1.1e-56 224.2 241 50.2
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 1.1e-56 224.2 241 50.2
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 3.2e-56 222.6 241 50.2
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 3.2e-56 222.6 241 49.8
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 4.7e-55 218.8 181 58.0
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 1.0e-54 217.6 226 51.3
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 2.3e-54 216.5 142 69.0
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 3.3e-53 212.6 144 68.1
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 3.3e-53 212.6 176 55.1
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 7.0e-51 204.9 183 53.0
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 2.2e-49 199.9 192 47.9
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 1.1e-48 197.6 164 59.1
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 3.2e-48 196.1 180 51.1
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 4.2e-48 195.7 195 54.4
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 4.7e-47 192.2 173 53.2
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 6.8e-46 188.3 245 42.0
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 1.4e-43 180.6 200 47.5
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 1.8e-43 180.3 182 46.2
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 5.4e-43 178.7 202 44.6
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 6.6e-41 171.8 220 42.3
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 3.8e-33 146.0 88 77.3
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 2.1e-31 140.2 170 47.1
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 1.4e-30 137.5 145 51.7
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 2.0e-29 133.7 254 33.1
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 4.9e-28 129.0 215 37.2
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 8.9e-22 108.2 83 60.2
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 6.0e-18 95.5 159 38.4
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 7.3e-16 88.6 67 59.7
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 7.3e-16 88.6 128 37.5
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 4.7e-15 85.9 94 40.4
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 7.1e-11 72.0 73 47.9
Cre10.g463800 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 1.5e-08 64.3 182 29.1
HPP92_026872 Vanilla planifolia HOM05D007174 ORTHO05D009061 4.3e-08 62.8 73 39.7
Oeu004139.1 Olea europaea HOM05D007174 ORTHO05D009061 2.4e-06 57.0 87 39.1
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 4.0e-06 56.2 44 56.8


User provided reference genes

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