Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 6.8e-108 394.0 204 100.0
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 7.5e-107 390.6 204 98.5
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 1.2e-99 366.7 204 93.6
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 9.2e-89 330.5 204 84.3
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.9e-86 322.8 204 84.3
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 3.3e-86 322.0 204 81.9
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 1.4e-76 290.0 192 77.1
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 4.0e-76 288.5 207 74.4
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 2.9e-74 282.3 192 75.0
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 2.4e-73 279.3 208 70.2
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 5.4e-73 278.1 205 75.6
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 4.6e-72 275.0 193 72.5
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 7.8e-72 274.2 195 72.8
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.3e-71 273.5 194 73.2
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 3.0e-71 272.3 195 72.3
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 3.0e-71 272.3 194 72.7
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 5.1e-71 271.6 206 70.4
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 5.1e-71 271.6 204 70.6
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 6.6e-71 271.2 194 72.2
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.5e-70 270.0 205 67.8
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.9e-70 269.6 203 69.5
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 2.5e-70 269.2 205 68.8
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.5e-70 269.2 205 68.8
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.5e-70 269.2 205 68.8
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 2.5e-70 269.2 192 71.9
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 3.3e-70 268.9 198 69.2
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 5.6e-70 268.1 204 67.6
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 7.3e-70 267.7 204 68.6
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 7.3e-70 267.7 203 66.5
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 7.3e-70 267.7 194 71.6
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.3e-69 266.9 205 67.8
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.3e-69 266.9 205 67.8
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 1.3e-69 266.9 195 70.8
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 1.3e-69 266.9 206 66.5
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 1.6e-69 266.5 194 71.6
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 2.1e-69 266.2 205 68.8
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.8e-69 265.8 204 69.1
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 2.8e-69 265.8 208 68.8
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 2.8e-69 265.8 195 71.8
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 2.8e-69 265.8 206 68.4
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 4.8e-69 265.0 199 69.8
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 6.2e-69 264.6 200 69.5
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 6.2e-69 264.6 209 69.4
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 1.4e-68 263.5 194 71.6
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 1.4e-68 263.5 205 67.3
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 1.8e-68 263.1 203 67.0
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 1.8e-68 263.1 196 71.9
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 2.4e-68 262.7 200 68.0
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 2.4e-68 262.7 205 68.8
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 2.4e-68 262.7 196 69.4
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 3.1e-68 262.3 193 69.9
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 4.0e-68 261.9 200 67.5
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 4.0e-68 261.9 196 69.4
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 4.0e-68 261.9 194 71.1
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 5.3e-68 261.5 205 68.8
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 5.3e-68 261.5 202 67.8
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 6.9e-68 261.2 206 66.0
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 6.9e-68 261.2 198 67.7
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 1.2e-67 260.4 200 67.5
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 1.5e-67 260.0 205 69.3
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 2.0e-67 259.6 205 68.3
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 2.6e-67 259.2 206 66.5
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 2.6e-67 259.2 207 67.6
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 2.6e-67 259.2 201 68.2
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 2.6e-67 259.2 195 69.7
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 3.4e-67 258.8 198 67.7
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 7.6e-67 257.7 197 71.1
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 7.6e-67 257.7 205 66.8
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 9.9e-67 257.3 194 67.5
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 1.7e-66 256.5 205 65.9
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 1.7e-66 256.5 222 63.5
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 2.9e-66 255.8 193 68.4
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 2.9e-66 255.8 183 72.1
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 6.4e-66 254.6 204 66.2
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 1.4e-65 253.4 213 65.7
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 1.4e-65 253.4 196 66.3
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 3.2e-65 252.3 202 66.3
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 7.1e-65 251.1 200 67.0
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 7.1e-65 251.1 193 67.9
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 9.3e-65 250.8 196 67.3
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 3.5e-64 248.8 198 67.7
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 3.5e-64 248.8 198 65.7
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 6.0e-64 248.1 203 66.5
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 1.3e-63 246.9 194 66.0
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 1.3e-63 246.9 197 67.5
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 5.1e-63 245.0 176 72.7
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 8.7e-63 244.2 205 63.9
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 1.1e-62 243.8 205 63.4
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 1.5e-62 243.4 199 64.8
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 2.6e-59 232.6 192 60.9
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 9.9e-59 230.7 201 62.2
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 7.9e-56 221.1 193 62.2
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 6.7e-55 218.0 190 64.2
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 5.8e-51 204.9 179 64.2
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 7.6e-51 204.5 143 73.4
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 2.9e-50 202.6 198 55.1
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 2.5e-46 189.5 197 53.3
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 1.3e-45 187.2 175 60.0
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 1.1e-44 184.1 150 65.3
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.2e-43 180.6 205 51.7
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 2.0e-43 179.9 212 48.6
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 5.5e-41 171.8 169 58.6
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 7.2e-33 144.8 131 59.5
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 1.6e-24 117.1 110 54.5
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 2.1e-24 116.7 95 63.2
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 3.7e-21 105.9 86 62.8
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.5e-17 94.0 158 39.2
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 2.1e-16 90.1 59 76.3
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 4.7e-16 89.0 93 53.8
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 1.8e-15 87.0 93 52.7
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 1.2e-14 84.3 47 80.9
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.8e-13 79.0 81 55.6
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.3e-13 78.6 70 60.0
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.1e-12 77.8 70 58.6
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.1e-12 77.8 70 58.6
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.1e-12 77.8 70 58.6
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 5.3e-12 75.5 70 57.1
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 7.0e-12 75.1 70 57.1
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 9.1e-12 74.7 70 57.1
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 5.0e-10 68.9 103 47.6
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 2.5e-09 66.6 108 44.4
Nitab4.5_0006622g0070 Nicotiana tabacum HOM05D006363 ORTHO05D007920 3.6e-08 62.8 39 76.9


User provided reference genes

Program Settings