Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 6.6e-162 573.9 282 100.0
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 4.6e-155 551.2 282 96.5
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 4.9e-149 531.2 283 92.6
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 3.7e-120 435.3 283 76.7
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 7.4e-105 384.4 286 70.6
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.9e-101 372.5 285 68.4
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.2e-83 313.9 287 61.3
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 1.6e-83 313.5 284 57.7
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.1e-83 313.2 292 62.3
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 3.1e-79 299.3 284 61.3
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 9.1e-79 297.7 191 72.8
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 1.5e-76 290.4 270 57.4
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.5e-76 290.4 227 63.4
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 1.6e-75 287.0 279 58.4
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 1.0e-74 284.3 245 59.6
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 1.8e-74 283.5 234 60.3
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 3.0e-74 282.7 235 62.1
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 2.6e-73 279.6 196 67.9
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 1.3e-72 277.3 282 56.7
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 2.2e-72 276.6 224 62.1
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 2.9e-72 276.2 224 61.6
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 4.9e-72 275.4 189 68.3
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 6.4e-72 275.0 193 68.4
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 6.4e-72 275.0 224 61.2
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 1.6e-70 270.4 223 60.1
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 2.9e-69 266.2 190 66.3
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 6.6e-69 265.0 239 59.0
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 3.3e-68 262.7 202 64.4
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 4.3e-68 262.3 247 57.9
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.3e-68 262.3 230 60.0
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 4.3e-68 262.3 227 59.0
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.3e-68 261.5 229 59.8
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 9.5e-68 261.2 190 65.8
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 1.2e-67 260.8 227 65.6
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 2.1e-67 260.0 220 60.0
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 3.6e-67 259.2 230 60.4
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 3.6e-67 259.2 269 54.3
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 6.2e-67 258.5 215 62.3
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 8.0e-67 258.1 284 51.8
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 8.0e-67 258.1 229 59.4
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 8.0e-67 258.1 229 59.4
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 8.0e-67 258.1 225 58.7
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 1.0e-66 257.7 232 53.9
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.4e-66 257.3 229 59.4
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.4e-66 257.3 229 59.0
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 4.0e-66 255.8 262 51.9
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 5.2e-66 255.4 204 60.3
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 5.2e-66 255.4 240 55.4
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 6.8e-66 255.0 204 60.3
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 8.9e-66 254.6 214 60.3
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 8.9e-66 254.6 204 64.2
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 2.0e-65 253.4 197 66.0
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 3.4e-65 252.7 258 51.9
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 3.4e-65 252.7 192 63.5
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 3.4e-65 252.7 233 56.7
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 7.5e-65 251.5 191 62.8
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 7.5e-65 251.5 226 58.0
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 1.7e-64 250.4 215 58.6
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 1.7e-64 250.4 218 59.2
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 1.7e-64 250.4 192 66.7
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 1.7e-64 250.4 267 52.8
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 2.2e-64 250.0 191 62.8
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 6.4e-64 248.4 218 59.6
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.1e-63 247.7 188 62.8
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 2.4e-63 246.5 232 54.7
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 4.1e-63 245.7 249 53.8
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 7.0e-63 245.0 201 63.2
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 6.0e-62 241.9 195 63.6
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 1.0e-61 241.1 241 53.1
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 2.5e-60 236.5 198 59.1
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 9.5e-60 234.6 243 50.2
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 2.1e-59 233.4 227 54.6
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 2.8e-59 233.0 243 50.2
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 2.8e-59 233.0 243 50.2
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 8.1e-59 231.5 191 58.1
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 1.1e-58 231.1 199 57.3
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 1.1e-58 231.1 225 52.4
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 1.1e-58 231.1 233 52.8
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 1.8e-58 230.3 208 55.8
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 1.8e-58 230.3 213 54.9
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 2.3e-58 229.9 208 55.8
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 2.3e-58 229.9 223 53.4
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 1.5e-57 227.3 227 52.0
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 4.4e-57 225.7 199 56.3
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 2.2e-56 223.4 225 52.0
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 4.9e-56 222.2 196 56.6
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 1.1e-55 221.1 157 65.0
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 1.1e-55 221.1 208 53.4
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 1.9e-55 220.3 246 48.8
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 2.4e-55 219.9 200 56.5
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 4.1e-55 219.2 183 59.6
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 2.7e-54 216.5 218 51.4
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 6.0e-54 215.3 221 53.4
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 7.8e-54 214.9 248 48.0
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.3e-53 213.4 203 54.2
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 6.6e-53 211.8 222 52.7
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 5.2e-50 202.2 146 67.1
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 2.2e-48 196.8 217 47.0
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 4.9e-48 195.7 144 66.7
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 3.9e-45 186.0 281 43.4
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 5.1e-45 185.7 188 48.9
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 3.4e-41 172.9 169 58.0
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.3e-37 160.2 117 67.5
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 8.7e-37 158.3 142 59.2
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 1.9e-36 157.1 181 45.9
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.4e-33 146.4 131 57.3
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 7.6e-33 145.2 188 43.1
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 2.9e-32 143.3 159 52.2
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 8.4e-32 141.7 157 49.7
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 2.1e-30 137.1 205 42.0
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 6.6e-29 132.1 116 59.5
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 8.7e-29 131.7 121 56.2
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 4.5e-25 119.4 153 47.1
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.7e-24 117.5 112 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 3.8e-24 116.3 135 48.9
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 7.9e-22 108.6 90 60.0
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.0e-21 106.7 128 50.8
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.7e-19 99.8 95 57.9
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-17 93.6 112 39.3
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 1.3e-16 91.3 96 53.1
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 1.1e-15 88.2 221 30.8
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 3.1e-10 70.1 46 67.4
SEGI_10524 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.8e-08 63.2 66 50.0
SEGI_09763 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 8.4e-08 62.0 64 51.6
MCO16G519 Micromonas commoda HOM05D006270 ORTHO05D007755 1.1e-07 61.6 276 22.5
MCO03G108 Micromonas commoda HOM05D006270 ORTHO05D007755 7.9e-06 55.5 180 29.4


User provided reference genes

Program Settings