Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.7e-109 399.4 214 100.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 5.7e-97 357.8 209 94.3
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 3.4e-94 348.6 199 96.0
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 3.2e-84 315.5 209 84.2
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.5e-78 296.6 209 79.4
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.2e-77 292.7 209 78.5
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 5.0e-69 265.0 209 71.8
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.8e-66 254.2 209 72.2
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 8.8e-66 254.2 209 72.2
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 3.7e-64 248.8 209 70.8
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 8.8e-58 227.6 209 64.1
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.8e-55 219.9 200 67.0
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.1e-55 219.2 209 61.2
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 3.1e-55 219.2 209 61.2
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.3e-53 213.8 207 60.9
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.7e-53 213.4 209 61.7
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.7e-53 213.4 209 61.7
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.9e-53 212.6 209 63.6
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 5.0e-53 211.8 209 62.7
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 6.5e-53 211.5 185 68.6
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 4.2e-52 208.8 205 64.4
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 7.2e-52 208.0 211 61.1
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.6e-51 206.8 205 63.4
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.7e-51 206.1 218 61.0
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 3.6e-51 205.7 203 57.1
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.7e-51 205.3 209 62.2
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 4.7e-51 205.3 206 63.6
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 4.7e-51 205.3 205 63.4
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.4e-50 203.8 209 62.2
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 3.0e-50 202.6 209 60.3
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 6.8e-50 201.4 209 62.2
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 8.8e-50 201.1 209 55.5
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.5e-49 200.3 206 61.7
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.4e-49 198.7 180 66.1
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 4.4e-49 198.7 209 62.7
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.3e-48 197.2 207 60.9
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 8.3e-48 194.5 207 59.4
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 8.3e-48 194.5 207 59.4
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.1e-47 194.1 205 59.5
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.4e-47 193.7 205 61.0
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.4e-47 193.0 206 59.2
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.1e-47 192.2 207 60.4
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 1.2e-46 190.7 205 59.5
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.5e-46 189.1 209 52.6
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 3.8e-45 185.7 205 58.5
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 5.0e-45 185.3 207 59.9
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.2e-43 180.6 210 55.7
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 3.6e-43 179.1 207 56.5
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-42 176.4 215 55.8
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 5.2e-42 175.3 209 56.5
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 8.9e-42 174.5 207 56.0
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.2e-41 174.1 204 54.4
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-41 173.3 213 54.9
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.0e-41 173.3 213 54.5
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.4e-41 172.2 210 51.0
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 7.5e-41 171.4 209 54.1
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.9e-40 168.7 207 53.1
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.4e-40 168.3 208 55.8
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-39 167.2 208 55.3
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-39 167.2 208 55.3
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 9.2e-39 164.5 209 55.0
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.2e-38 164.1 208 51.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 2.7e-38 162.9 210 52.9
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 4.6e-38 162.2 208 54.8
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 5.9e-38 161.8 208 50.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.7e-37 160.2 192 49.0
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 5.0e-37 158.7 211 55.0
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 6.6e-37 158.3 211 54.5
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 6.6e-37 158.3 199 57.8
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 8.6e-37 157.9 209 51.2
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.5e-36 156.4 203 52.7
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 5.6e-36 155.2 211 47.9
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 7.3e-36 154.8 207 53.1
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.6e-35 153.7 199 56.8
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.8e-35 152.9 206 49.5
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 3.6e-35 152.5 212 48.1
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.2e-35 151.8 199 56.3
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.8e-34 150.2 207 50.2
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 4.0e-34 149.1 199 52.8
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.2e-34 148.7 208 51.4
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 8.9e-34 147.9 207 51.7
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.9e-34 147.9 208 54.8
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.2e-33 147.5 208 54.8
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-33 147.1 208 54.8
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.5e-33 147.1 209 48.8
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 2.0e-33 146.7 206 52.9
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.6e-33 146.4 199 55.3
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 7.5e-33 144.8 200 53.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.3e-32 144.1 203 48.8
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.7e-32 143.7 202 52.0
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.7e-32 143.7 205 51.2
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 6.4e-32 141.7 196 54.6
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 6.4e-32 141.7 205 50.2
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.1e-31 141.0 205 46.8
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.4e-31 138.7 188 52.1
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.4e-31 138.7 199 53.3
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 7.0e-31 138.3 187 46.5
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.2e-30 137.5 208 47.1
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.2e-30 137.5 220 46.8
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.6e-30 137.1 206 46.6
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.6e-30 137.1 202 50.5
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.0e-30 136.7 206 46.1
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.0e-30 136.7 206 45.6
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 2.0e-30 136.7 145 52.4
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.5e-30 136.0 206 47.1
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 4.6e-30 135.6 205 46.3
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.6e-30 135.6 140 65.0
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 6.0e-30 135.2 206 46.1
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.8e-30 134.8 194 46.4
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 7.8e-30 134.8 206 50.0
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.7e-29 133.7 199 47.7
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 1.7e-29 133.7 206 49.5
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.3e-29 133.3 198 52.5
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.0e-29 132.9 211 45.5
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.0e-29 132.9 199 47.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 3.0e-29 132.9 192 49.5
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 8.6e-29 131.3 210 47.6
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.9e-28 130.2 199 47.2
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 4.3e-28 129.0 198 47.5
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 7.3e-28 128.3 206 47.6
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.2e-27 127.5 212 45.3
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.6e-27 127.1 208 44.7
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 2.1e-27 126.7 202 47.0
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.1e-27 126.7 202 47.0
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 2.1e-27 126.7 199 52.3
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.8e-27 126.3 207 48.8
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 4.7e-27 125.6 199 46.7
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 6.2e-27 125.2 194 41.2
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 6.2e-27 125.2 195 43.6
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.2e-27 125.2 199 46.7
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 6.2e-27 125.2 213 45.5
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 8.1e-27 124.8 206 45.6
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 2.3e-26 123.2 207 46.9
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 4.0e-26 122.5 194 42.3
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 4.0e-26 122.5 261 37.2
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 6.8e-26 121.7 210 48.6
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 8.9e-26 121.3 186 47.3
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 8.9e-26 121.3 207 47.8
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.2e-25 120.9 195 43.1
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.2e-25 120.9 197 49.2
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 1.5e-25 120.6 205 46.3
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 2.0e-25 120.2 201 48.8
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 3.4e-25 119.4 211 43.6
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 4.4e-25 119.0 206 46.6
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 5.8e-25 118.6 186 47.3
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 5.8e-25 118.6 206 46.6
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.3e-24 117.5 205 44.9
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.3e-24 117.5 254 37.4
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.4e-23 114.0 206 45.6
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.9e-23 113.6 130 56.2
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 2.4e-23 113.2 210 42.4
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 2.4e-23 113.2 205 44.9
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.1e-22 110.2 205 42.4
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.7e-22 109.8 201 43.3
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 4.6e-22 109.0 108 54.6
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 6.0e-22 108.6 201 43.3
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 2.3e-21 106.7 193 46.1
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 6.6e-21 105.1 134 56.0
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 6.6e-21 105.1 207 45.9
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 2.5e-20 103.2 197 43.1
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 3.3e-20 102.8 193 46.1
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 3.3e-20 102.8 205 42.4
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.3e-20 101.7 166 44.6
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 4.7e-19 99.0 220 42.7
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 6.2e-19 98.6 198 42.9
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 1.4e-18 97.4 100 70.0
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 4.0e-18 95.9 100 60.0
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 4.0e-18 95.9 100 60.0
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 8.9e-18 94.7 86 62.8
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 8.9e-18 94.7 128 42.2
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.0e-17 93.6 191 41.9
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 5.8e-17 92.0 203 39.9
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 9.9e-17 91.3 197 43.7
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 1.7e-16 90.5 127 57.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 2.2e-16 90.1 217 38.7
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.9e-16 89.7 199 38.7
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 3.5e-14 82.8 218 39.0
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 3.5e-14 82.8 215 42.8
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 7.8e-14 81.6 72 65.3
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 4.3e-12 75.9 206 39.3
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 1.1e-10 71.2 153 48.4
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 5.2e-10 68.9 209 36.4
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 2.0e-09 67.0 137 36.5
Pp3c26_7830 Physcomitrium patens HOM05D040812 ORTHO05D031180 1.3e-08 64.3 198 38.4
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 4.9e-08 62.4 50 74.0
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.6e-06 57.4 100 50.0
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 1.6e-06 57.4 111 45.0


User provided reference genes

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