Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.4e-161 571.6 294 100.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.2e-159 565.1 294 98.6
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.2e-145 520.0 292 91.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.1e-132 476.9 296 82.1
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.3e-128 463.4 292 82.2
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.7e-128 463.0 296 81.1
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 7.2e-127 457.6 293 79.2
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.1e-77 294.3 291 55.7
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.7e-75 287.0 289 54.0
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 2.9e-75 286.2 293 52.2
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 3.8e-75 285.8 292 51.0
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.2e-74 282.7 300 50.7
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 5.4e-74 282.0 286 52.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 7.1e-74 281.6 287 54.0
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 7.1e-74 281.6 286 51.7
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 9.2e-74 281.2 300 52.7
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 9.2e-74 281.2 299 50.8
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.6e-73 280.4 299 50.2
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.1e-73 280.0 288 53.8
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.5e-73 279.3 296 51.0
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 3.5e-73 279.3 290 51.4
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.8e-73 278.1 299 52.5
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 3.0e-72 276.2 307 50.8
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.9e-72 275.8 291 54.3
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 5.6e-71 271.9 287 51.9
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 9.6e-71 271.2 293 51.2
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.2e-70 270.8 293 51.2
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.2e-70 270.8 303 49.8
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.6e-70 270.4 292 51.0
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.1e-70 270.0 299 49.2
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.1e-70 270.0 293 54.3
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 6.2e-70 268.5 294 49.0
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.1e-69 266.2 300 48.0
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 8.9e-69 264.6 286 50.0
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 3.4e-68 262.7 289 50.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 4.4e-68 262.3 292 48.6
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.9e-67 259.6 286 50.3
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 8.4e-67 258.1 287 53.7
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.4e-67 258.1 287 53.7
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 8.4e-67 258.1 295 48.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 8.4e-67 258.1 299 48.2
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.4e-66 256.5 287 53.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.4e-66 256.5 289 49.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 4.2e-66 255.8 299 47.8
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.4e-66 255.4 303 46.9
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.3e-66 254.6 287 53.0
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.6e-65 253.8 287 52.6
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.6e-65 252.3 292 49.3
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.7e-64 250.4 286 49.3
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.9e-64 249.2 294 49.7
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 8.7e-64 248.1 290 46.9
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 8.7e-64 248.1 287 47.7
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.5e-63 246.5 286 48.3
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.5e-63 246.5 331 45.9
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.5e-63 246.5 276 51.4
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 7.3e-63 245.0 295 45.4
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-62 243.4 319 48.0
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 4.8e-62 242.3 289 48.4
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 6.2e-62 241.9 289 46.7
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 8.1e-62 241.5 295 46.8
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.1e-61 241.1 253 51.0
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 5.3e-61 238.8 293 45.7
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.5e-60 237.3 292 47.3
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 5.8e-60 235.3 298 41.9
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 4.9e-59 232.3 165 73.9
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 6.4e-59 231.9 286 45.8
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 7.1e-58 228.4 291 44.3
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.1e-57 226.9 291 45.0
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 7.9e-57 224.9 266 47.0
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 8.7e-56 221.5 304 43.4
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 9.6e-55 218.0 205 56.6
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 3.1e-53 213.0 331 39.0
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.6e-52 209.9 269 43.9
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 7.6e-52 208.4 295 41.7
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.3e-51 207.6 272 43.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 8.4e-51 204.9 286 41.3
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.0e-48 198.0 207 50.2
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.8e-48 197.2 161 62.1
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.1e-48 195.7 296 40.5
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 4.3e-47 192.6 284 40.1
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 5.6e-47 192.2 284 40.1
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-46 191.0 283 39.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.1e-46 190.3 283 41.3
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 2.4e-45 186.8 287 41.1
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.3e-43 181.0 196 52.0
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.9e-43 179.9 211 49.3
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 8.4e-43 178.3 150 62.0
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.4e-42 177.6 234 48.3
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.2e-41 174.5 201 46.3
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 3.5e-41 172.9 287 38.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.9e-40 169.5 287 39.4
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 8.7e-40 168.3 194 45.4
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 3.3e-39 166.4 214 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.8e-38 162.5 306 31.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 2.6e-36 156.8 240 38.8
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.6e-33 146.4 297 35.0
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.3e-31 139.4 137 51.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.6e-30 137.5 212 43.4
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 8.2e-30 135.2 152 46.7
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.8e-29 134.0 300 34.0
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.4e-29 133.7 200 38.5
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 5.3e-29 132.5 227 37.4
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 6.9e-29 132.1 254 33.9
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 6.9e-29 132.1 227 38.8
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.2e-28 131.3 268 31.7
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 7.7e-28 128.6 237 37.1
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.7e-27 127.5 342 29.8
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.7e-27 127.5 227 37.0
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 5.5e-26 122.5 93 66.7
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.2e-25 121.3 110 58.2
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.9e-24 116.3 206 36.9
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.2e-22 110.5 128 49.2
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.1e-21 108.2 102 55.9
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.8e-21 107.5 297 29.3
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.4e-21 107.1 107 52.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.1e-18 98.2 79 68.4
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.9e-18 97.4 108 50.0
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.2e-17 94.7 58 79.3
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.6e-17 93.2 58 77.6
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.3e-16 90.5 60 71.7
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.0e-16 90.1 81 59.3
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.0e-16 90.1 81 59.3
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.2e-14 84.0 57 68.4
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 2.8e-14 83.6 96 47.9
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.3e-11 74.7 191 30.9
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 3.6e-09 66.6 122 30.3
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 3.0e-08 63.5 51 56.9
Lsat_1_v5_gn_8_10160 Lactuca sativa HOM05D006306 ORTHO05D007912 5.7e-07 59.3 277 23.1
AagrBONN_evm.TU.Sc2ySwM_117.310 Anthoceros agrestis HOM05D020303 ORTHO05D021299 6.3e-06 55.8 46 56.5


User provided reference genes

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