Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 5.7e-95 350.9 175 100.0
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.8e-94 347.8 175 98.9
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.7e-91 339.3 175 95.4
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 2.9e-91 338.6 175 96.6
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.0e-88 328.6 175 92.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 5.1e-88 327.8 176 92.6
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.9e-87 325.9 176 92.0
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 3.3e-87 325.1 176 92.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.3e-83 313.2 158 95.6
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.1e-82 310.1 177 87.6
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.4e-82 309.7 179 87.2
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.4e-80 303.1 179 84.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.8e-80 302.8 179 83.8
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.5e-79 299.7 178 84.3
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.7e-78 295.0 179 84.9
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 6.9e-77 290.8 173 83.8
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 2.2e-75 285.8 179 78.8
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 5.0e-75 284.6 178 82.0
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.6e-73 279.6 177 80.2
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.6e-73 279.6 174 79.9
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 6.1e-73 277.7 176 80.1
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 7.9e-73 277.3 174 79.9
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.0e-72 276.9 164 82.3
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.4e-72 276.6 169 81.7
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.4e-72 276.6 174 79.9
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.3e-72 275.8 169 81.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.0e-72 275.4 174 81.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.1e-72 274.6 173 80.3
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 6.7e-72 274.2 174 80.5
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.1e-71 273.5 175 80.0
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.5e-71 273.1 174 79.3
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 2.0e-71 272.7 170 80.6
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 2.6e-71 272.3 174 79.3
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.6e-71 272.3 181 77.3
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.6e-71 272.3 181 77.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.3e-71 271.9 159 83.6
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 4.4e-71 271.6 175 79.4
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 5.7e-71 271.2 173 79.2
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.4e-71 270.8 170 79.4
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 7.4e-71 270.8 174 79.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 9.7e-71 270.4 174 77.6
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.3e-70 270.0 174 78.2
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.2e-70 269.2 159 83.6
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.2e-70 269.2 174 78.2
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.8e-70 268.9 174 77.6
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.8e-70 268.9 178 77.0
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 4.8e-70 268.1 174 79.3
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 4.8e-70 268.1 173 79.2
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 6.3e-70 267.7 161 82.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.2e-70 267.3 170 78.2
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.1e-69 266.9 174 77.6
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.1e-69 266.9 154 84.4
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.1e-69 266.9 176 78.4
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.1e-69 266.9 167 80.2
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.8e-69 266.2 174 74.7
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.8e-69 266.2 174 77.0
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.8e-69 266.2 174 77.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.8e-69 266.2 174 79.3
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.4e-69 265.8 164 81.1
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.4e-69 265.8 174 77.6
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 3.1e-69 265.4 174 78.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 4.1e-69 265.0 174 77.6
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 5.3e-69 264.6 164 81.1
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.3e-69 264.6 172 77.9
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.0e-69 264.2 166 81.9
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 9.1e-69 263.8 169 76.9
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 9.1e-69 263.8 164 81.1
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 9.1e-69 263.8 174 78.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.5e-68 263.1 174 75.9
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 4.5e-68 261.5 174 77.6
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 4.5e-68 261.5 175 76.0
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.9e-68 261.2 174 76.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.9e-68 261.2 174 75.9
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.3e-67 260.0 174 75.9
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-67 260.0 174 76.4
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 75.9
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 76.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 77.0
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 77.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.7e-67 259.6 151 86.1
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.2e-67 259.2 174 76.4
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-67 259.2 174 76.4
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-67 259.2 174 76.4
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.2e-67 259.2 174 75.3
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.9e-67 258.8 168 78.0
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.9e-67 258.8 174 75.9
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.9e-67 258.8 174 75.9
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 3.8e-67 258.5 174 75.9
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 5.0e-67 258.1 174 76.4
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 6.5e-67 257.7 174 74.7
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.5e-67 257.7 154 84.4
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.5e-67 257.3 174 75.9
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.5e-67 257.3 174 75.9
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 8.5e-67 257.3 178 75.3
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 8.5e-67 257.3 174 76.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.1e-66 256.9 168 77.4
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.1e-66 256.9 174 74.7
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.1e-66 256.9 173 76.3
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.1e-66 256.9 174 75.3
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 1.5e-66 256.5 174 75.9
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.5e-66 256.5 153 81.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.5e-66 256.5 174 75.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 2.5e-66 255.8 168 76.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.2e-66 255.4 174 74.7
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.2e-66 255.4 172 75.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 3.2e-66 255.4 172 75.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 3.2e-66 255.4 174 75.3
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 4.2e-66 255.0 174 73.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 5.5e-66 254.6 168 76.8
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.5e-66 254.6 174 74.1
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 7.2e-66 254.2 168 76.8
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 7.2e-66 254.2 168 76.8
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 7.2e-66 254.2 148 85.1
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 9.4e-66 253.8 168 76.8
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 9.4e-66 253.8 168 76.8
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 9.4e-66 253.8 230 60.4
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 174 74.7
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-65 253.1 174 74.7
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 2.7e-65 252.3 168 76.2
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.6e-65 251.9 174 73.0
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 4.7e-65 251.5 165 77.6
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.0e-64 250.4 173 72.8
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 5.2e-64 248.1 168 73.8
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.1e-63 246.9 158 75.3
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.1e-63 246.9 158 75.3
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 2.0e-63 246.1 183 71.6
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 5.7e-63 244.6 183 70.5
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-61 240.0 174 72.4
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.4e-61 240.0 174 72.4
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.8e-61 239.6 183 69.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.8e-61 239.6 163 73.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 7.0e-61 237.7 183 68.9
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 8.5e-59 230.7 159 71.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.9e-58 229.6 165 70.9
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.7e-57 225.7 159 70.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 8.0e-57 224.2 159 70.4
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.8e-56 223.0 169 68.0
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 4.0e-56 221.9 150 74.0
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.0e-55 219.5 158 67.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 3.1e-53 212.2 131 79.4
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.2e-51 206.1 131 78.6
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 4.2e-50 201.8 172 58.7
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 6.1e-49 198.0 168 63.1
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.4e-47 192.2 132 72.0
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.9e-43 179.1 178 59.6
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.5e-42 176.8 154 59.1
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 7.2e-42 174.5 136 64.0
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 9.5e-42 174.1 111 73.9
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 4.7e-41 171.8 107 85.0
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 6.1e-41 171.4 136 62.5
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.2e-39 167.2 136 61.0
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 5.7e-39 164.9 135 58.5
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 8.0e-33 144.4 125 64.0
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.8e-32 143.3 106 73.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.6e-31 139.4 174 52.3
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 6.4e-30 134.8 90 80.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.4e-29 133.7 88 81.8
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 7.0e-29 131.3 120 51.7
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.6e-28 128.6 91 68.1
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.5e-26 123.6 57 94.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.6e-25 120.2 176 39.8
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-25 118.6 132 42.4
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 8.1e-25 117.9 94 64.9
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-23 114.0 129 44.2
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-23 114.0 129 44.2
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 4.4e-23 112.1 70 81.4
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 7.8e-20 101.3 72 70.8
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.1e-18 97.4 67 65.7
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 1.9e-18 96.7 70 65.7
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 7.3e-18 94.7 100 44.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 7.3e-18 94.7 100 44.0
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.1e-17 93.2 174 40.8
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 2.9e-14 82.8 101 41.6
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 6.4e-14 81.6 52 78.8
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 9.2e-13 77.8 59 50.8
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 5.6e-10 68.6 95 40.0
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 5.8e-07 58.5 97 38.1


User provided reference genes

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