Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 2.8e-152 542.0 280 100.0
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 8.3e-149 530.4 280 97.9
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 1.1e-143 513.5 276 96.4
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.5e-126 456.4 288 84.7
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 3.2e-124 448.7 288 83.3
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 1.6e-123 446.4 281 85.8
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 3.8e-93 345.5 280 70.4
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 6.5e-93 344.7 280 70.4
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 4.2e-92 342.0 287 65.2
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 6.7e-90 334.7 288 64.6
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 7.4e-89 331.3 292 64.4
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 5.0e-85 318.5 286 63.3
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 8.5e-85 317.8 284 62.7
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.1e-84 317.4 299 62.2
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.5e-84 316.2 287 60.3
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 3.2e-84 315.8 301 61.1
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 4.7e-83 312.0 285 60.7
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.0e-82 310.8 284 62.3
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 5.1e-82 308.5 277 61.0
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 6.7e-82 308.1 281 63.3
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 8.8e-82 307.8 289 62.6
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 1.5e-81 307.0 291 61.9
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 4.4e-81 305.4 283 60.8
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 5.7e-81 305.1 287 59.6
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 9.7e-81 304.3 292 61.6
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 1.7e-80 303.5 286 60.8
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 2.2e-80 303.1 281 62.3
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 1.1e-79 300.8 281 59.8
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 1.4e-79 300.4 280 59.6
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 2.4e-79 299.7 288 58.7
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 2.2e-77 293.1 286 57.7
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 2.2e-77 293.1 289 59.5
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 2.9e-77 292.7 284 57.4
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 3.8e-77 292.4 288 60.4
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 3.8e-77 292.4 285 57.5
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 3.8e-77 292.4 293 58.0
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 5.0e-77 292.0 285 57.5
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 8.5e-77 291.2 292 58.2
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 1.5e-76 290.4 280 58.9
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 1.5e-76 290.4 288 57.3
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 1.9e-76 290.0 303 56.8
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.9e-76 290.0 299 57.9
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.9e-76 290.0 299 57.9
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 2.5e-76 289.7 287 58.2
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.2e-76 289.3 305 56.7
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 3.2e-76 289.3 285 59.3
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 4.2e-76 288.9 282 61.3
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 4.2e-76 288.9 284 59.9
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 5.5e-76 288.5 303 56.4
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 9.4e-76 287.7 285 57.2
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 1.2e-75 287.3 284 59.2
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 2.1e-75 286.6 284 59.2
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 2.1e-75 286.6 284 58.5
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 2.7e-75 286.2 293 58.7
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 2.7e-75 286.2 285 56.5
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 3.6e-75 285.8 288 56.9
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 8.0e-75 284.6 316 55.4
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 8.0e-75 284.6 326 52.5
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 1.8e-74 283.5 285 55.4
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 3.9e-74 282.3 287 56.1
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 3.9e-74 282.3 286 58.7
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 6.7e-74 281.6 287 56.4
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 6.7e-74 281.6 293 56.7
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 1.1e-73 280.8 285 56.8
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 2.6e-73 279.6 284 57.7
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 2.6e-73 279.6 283 57.2
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 4.4e-73 278.9 290 56.9
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 5.7e-73 278.5 284 57.7
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 5.7e-73 278.5 288 57.3
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 7.4e-73 278.1 285 58.2
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 9.7e-73 277.7 288 58.3
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 3.7e-72 275.8 287 54.7
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 4.8e-72 275.4 283 56.5
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.4e-71 273.1 326 52.5
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 7.7e-70 268.1 293 56.3
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 1.3e-69 267.3 275 57.8
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 5.0e-69 265.4 280 52.9
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 8.5e-69 264.6 239 61.9
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 1.9e-68 263.5 285 55.4
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 3.2e-68 262.7 276 53.3
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 1.6e-67 260.4 292 53.4
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 2.7e-67 259.6 283 53.0
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 3.6e-67 259.2 301 52.5
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 6.1e-67 258.5 273 57.5
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.0e-66 257.7 280 52.5
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.0e-66 257.7 359 46.5
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 1.4e-66 257.3 282 51.4
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.3e-66 256.5 284 54.2
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 2.3e-66 256.5 280 51.4
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 1.5e-65 253.8 351 47.3
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 2.0e-65 253.4 283 51.9
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.3e-64 250.8 277 54.9
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 1.3e-64 250.8 280 49.6
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 3.7e-64 249.2 290 50.7
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 1.1e-63 247.7 289 56.1
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.4e-63 247.3 280 50.7
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 1.4e-63 247.3 280 50.4
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 1.4e-63 247.3 277 48.4
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 2.4e-63 246.5 280 52.9
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 3.1e-63 246.1 286 51.4
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 2.0e-62 243.4 280 48.9
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 2.7e-62 243.0 280 48.9
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 2.7e-62 243.0 280 52.1
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 1.0e-61 241.1 277 48.0
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 1.5e-60 237.3 280 53.2
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 2.5e-60 236.5 280 52.5
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 9.4e-60 234.6 280 49.3
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 9.4e-60 234.6 280 49.3
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 9.4e-60 234.6 280 49.3
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.6e-59 233.8 276 50.4
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 2.1e-59 233.4 191 67.5
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 2.1e-59 233.4 280 46.1
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 1.0e-58 231.1 284 47.2
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 2.6e-57 226.5 242 50.4
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 5.7e-57 225.3 282 49.3
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 7.5e-57 224.9 282 48.9
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.3e-56 224.2 280 48.2
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 4.1e-55 219.2 475 35.8
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.6e-54 217.2 288 48.3
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 5.5e-52 208.8 278 50.0
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.6e-51 207.2 506 33.6
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 5.2e-50 202.2 296 44.3
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.1e-47 194.5 176 58.0
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 5.9e-46 188.7 175 60.0
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 3.9e-45 186.0 286 45.8
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.1e-44 184.5 176 60.2
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 9.5e-44 181.4 296 41.9
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 2.9e-40 169.9 230 47.8
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 3.5e-38 162.9 175 50.9
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 2.3e-37 160.2 178 52.8
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 6.6e-37 158.7 124 66.1
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 1.7e-32 144.1 175 51.4
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.7e-32 144.1 241 42.3
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 4.6e-30 136.0 111 69.4
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 2.3e-29 133.7 228 41.7
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 3.6e-27 126.3 286 36.4
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 1.5e-25 120.9 97 63.9
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 4.4e-25 119.4 280 33.2
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 1.7e-24 117.5 147 51.7
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 6.4e-24 115.5 102 61.8
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.7e-21 107.5 270 35.6
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.4e-18 97.8 150 40.7
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.2e-15 86.3 154 36.4
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 5.4e-15 85.9 231 32.5
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 1.1e-12 78.2 165 36.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.5e-12 77.0 152 35.5
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.3e-11 74.7 162 35.2
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.3e-11 74.7 158 36.1
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.6e-11 73.2 157 33.8
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.8e-10 70.9 152 32.2
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.8e-10 70.9 152 33.6
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.4e-10 70.5 152 32.2
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 5.8e-09 65.9 84 47.6
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 5.8e-09 65.9 84 47.6
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.3e-08 64.7 77 40.3
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.7e-08 64.3 71 46.5
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 2.9e-08 63.5 167 29.9
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 6.4e-08 62.4 223 27.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-07 61.6 167 28.7
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.9e-07 60.8 157 30.6
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.9e-07 60.8 71 42.3
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 4.2e-07 59.7 84 46.4
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 4.2e-07 59.7 154 26.0
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.1e-07 58.9 80 42.5
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 9.3e-07 58.5 193 28.5
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 1.6e-06 57.8 279 22.6
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 1.6e-06 57.8 176 30.1
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 1.6e-06 57.8 95 41.1
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 2.1e-06 57.4 79 40.5
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.7e-06 57.0 161 26.7
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 4.6e-06 56.2 178 29.2
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 4.6e-06 56.2 153 30.7
MSTRG.17319 Avicennia marina HOM05D008545 ORTHO05D010341 6.0e-06 55.8 150 30.7
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 6.0e-06 55.8 104 34.6
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.9e-06 55.5 114 34.2


User provided reference genes

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