Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 4.7e-79 298.1 188 100.0
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.6e-71 273.1 208 88.0
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 5.7e-61 238.0 188 80.3
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 7.5e-61 237.7 188 77.7
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 7.0e-59 231.1 186 76.9
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 7.5e-53 211.1 187 63.6
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.7e-52 208.8 187 59.9
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.1e-51 205.3 186 57.5
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 5.4e-51 204.9 190 63.2
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.7e-50 202.6 189 56.6
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 7.8e-50 201.1 188 62.2
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 6.6e-49 198.0 189 56.6
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 1.1e-48 197.2 187 55.6
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 2.5e-48 196.1 187 56.7
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 2.5e-48 196.1 187 56.7
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 3.3e-48 195.7 190 55.3
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 9.5e-48 194.1 188 55.3
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.2e-47 193.7 188 54.8
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 1.2e-47 193.7 186 55.4
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.6e-47 193.4 190 55.8
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 2.1e-47 193.0 190 55.8
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 3.6e-47 192.2 194 54.1
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.6e-47 192.2 194 54.1
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.6e-47 192.2 194 54.1
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.6e-47 192.2 194 54.1
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 3.6e-47 192.2 186 60.2
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 4.7e-47 191.8 186 53.8
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 4.7e-47 191.8 186 53.8
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 8.0e-47 191.0 187 54.5
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 8.0e-47 191.0 188 54.3
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 1.4e-46 190.3 187 52.9
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.8e-46 189.9 188 63.8
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 2.3e-46 189.5 187 54.5
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 4.0e-46 188.7 188 54.3
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 8.9e-46 187.6 188 56.4
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 8.9e-46 187.6 191 52.9
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 1.2e-45 187.2 188 60.1
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 1.2e-45 187.2 198 52.0
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 1.5e-45 186.8 186 50.5
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.5e-45 186.8 188 56.9
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.5e-45 186.8 188 54.8
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.5e-45 186.8 188 52.7
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 2.0e-45 186.4 187 54.0
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 2.0e-45 186.4 187 54.0
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 3.4e-45 185.7 187 53.5
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.4e-45 185.7 190 53.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.4e-45 185.7 190 53.2
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 4.4e-45 185.3 187 53.5
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 4.4e-45 185.3 187 53.5
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 4.4e-45 185.3 188 52.7
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 4.4e-45 185.3 187 54.5
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 5.8e-45 184.9 187 50.8
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 7.5e-45 184.5 187 52.4
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.5e-45 184.5 188 52.7
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.3e-44 183.7 187 52.9
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 2.2e-44 183.0 185 50.3
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 2.2e-44 183.0 189 52.4
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 2.9e-44 182.6 185 53.5
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 2.9e-44 182.6 188 58.5
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 2.9e-44 182.6 187 53.5
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 3.7e-44 182.2 187 52.9
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 6.4e-44 181.4 139 63.3
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 6.4e-44 181.4 190 50.0
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 1.1e-43 180.6 190 57.9
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 1.1e-43 180.6 186 50.0
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 2.4e-43 179.5 185 59.5
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 3.5e-42 175.6 186 52.2
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 4.6e-42 175.3 186 49.5
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 4.6e-42 175.3 185 54.6
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 6.0e-42 174.9 187 48.7
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 2.3e-41 172.9 188 50.0
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 2.3e-41 172.9 188 50.0
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 2.3e-41 172.9 192 47.4
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 3.0e-41 172.6 123 68.3
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 3.0e-41 172.6 187 46.0
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 6.6e-41 171.4 186 48.9
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 6.6e-41 171.4 187 62.6
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 1.9e-40 169.9 145 60.7
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.9e-40 169.9 188 54.3
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 2.5e-40 169.5 187 49.2
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 3.3e-40 169.1 223 43.5
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 2.8e-39 166.0 188 52.1
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 5.2e-38 161.8 193 50.3
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 8.9e-38 161.0 190 48.9
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 1.5e-37 160.2 185 52.4
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 6.4e-36 154.8 188 49.5
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 2.4e-35 152.9 188 50.0
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 4.1e-35 152.1 137 56.9
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 7.1e-35 151.4 186 46.2
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.2e-34 150.6 146 52.1
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 1.2e-34 150.6 136 52.9
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.2e-34 150.6 188 52.7
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.7e-34 149.4 188 52.1
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 1.1e-32 144.1 187 51.9
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 2.8e-31 139.4 131 54.2
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 4.7e-31 138.7 188 58.0
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.4e-30 136.3 131 51.9
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 2.0e-29 133.3 129 51.9
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.3e-28 130.6 188 46.8
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.9e-28 129.4 188 47.9
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 3.2e-27 125.9 107 58.9
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.2e-27 125.9 77 76.6
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.2e-27 125.9 186 46.8
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.6e-26 123.6 190 41.1
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 6.0e-26 121.7 75 74.7
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 4.3e-24 115.5 146 46.6
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 2.4e-22 109.8 75 65.3
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 9.9e-21 104.4 170 41.2
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 3.5e-18 95.9 190 41.6
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 4.6e-18 95.5 139 39.6
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 4.6e-18 95.5 146 46.6
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 6.0e-18 95.1 135 43.7
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.0e-17 92.8 139 43.2
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.5e-16 90.5 143 46.9
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.1e-15 86.7 136 36.8
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.8e-15 85.5 49 77.6
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.8e-15 85.5 49 77.6
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 8.1e-15 84.7 112 50.0
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.1e-14 84.3 142 35.9
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 6.9e-14 81.6 108 42.6
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 6.9e-14 81.6 53 66.0
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 3.8e-12 75.9 120 43.3
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 4.2e-11 72.4 108 58.3
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 7.9e-10 68.2 89 43.8
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 3.3e-08 62.8 85 44.7
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 2.1e-07 60.1 143 30.8


User provided reference genes

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