Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 1.8e-171 605.9 331 100.0
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 3.5e-146 521.9 331 89.1
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 1.3e-129 466.8 331 80.7
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 4.3e-128 461.8 341 75.1
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 1.1e-126 457.2 249 94.0
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 3.1e-126 455.7 334 77.2
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 3.0e-49 199.9 332 46.7
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 3.7e-47 193.0 327 46.8
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 4.9e-47 192.6 327 46.5
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 1.2e-42 177.9 338 45.3
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 4.7e-42 176.0 329 43.2
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 2.6e-40 170.2 332 45.2
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 3.4e-40 169.9 330 41.2
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 3.4e-40 169.9 323 45.2
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 7.5e-40 168.7 289 45.7
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 1.3e-39 167.9 314 43.0
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 4.1e-38 162.9 330 41.5
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 3.5e-37 159.8 328 42.7
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 4.6e-37 159.5 328 41.5
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 4.6e-37 159.5 321 43.9
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.6e-37 159.5 321 43.9
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.6e-37 159.5 321 43.9
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 1.0e-36 158.3 336 42.0
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 6.6e-36 155.6 276 45.3
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 8.6e-36 155.2 323 41.5
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 1.1e-35 154.8 328 41.5
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 1.1e-35 154.8 337 41.8
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 1.6e-34 151.0 326 41.7
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 2.1e-34 150.6 323 42.7
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 5.2e-33 146.0 330 41.5
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 9.8e-32 141.7 320 43.8
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 1.7e-31 141.0 283 43.8
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.9e-31 139.4 289 41.9
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 1.3e-28 131.3 271 43.2
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.3e-28 131.3 308 37.7
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 5.1e-28 129.4 279 41.9
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 6.6e-28 129.0 290 39.0
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 8.6e-28 128.6 316 40.2
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.1e-27 128.3 289 36.3
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 3.3e-27 126.7 317 36.9
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 3.3e-27 126.7 328 37.2
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 5.6e-27 125.9 273 43.6
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 2.1e-26 124.0 306 37.6
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 2.6e-24 117.1 273 37.0
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 7.6e-24 115.5 285 37.9
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 1.3e-23 114.8 260 39.2
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 2.9e-23 113.6 321 35.5
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 4.9e-23 112.8 302 37.1
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 5.4e-22 109.4 281 38.8
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 9.2e-22 108.6 323 38.1
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 2.7e-21 107.1 170 51.8
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 1.0e-20 105.1 315 36.5
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 1.7e-20 104.4 319 36.4
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 3.0e-20 103.6 378 34.7
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 3.0e-20 103.6 323 35.3
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 1.9e-19 100.9 233 42.1
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 1.9e-19 100.9 339 33.0
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 4.3e-19 99.8 312 40.1
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 5.6e-19 99.4 330 34.5
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 7.3e-19 99.0 289 34.3
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 9.6e-19 98.6 310 36.5
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 9.6e-19 98.6 277 36.8
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 1.6e-18 97.8 311 34.7
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 3.6e-18 96.7 339 34.5
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 4.7e-18 96.3 323 34.4
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 8.1e-18 95.5 307 32.2
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 1.1e-17 95.1 307 35.8
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 1.1e-17 95.1 281 36.3
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 1.4e-17 94.7 300 37.0
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 2.4e-17 94.0 350 34.3
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 2.4e-17 94.0 339 33.9
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 8.9e-17 92.0 350 32.3
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 1.2e-16 91.7 345 32.8
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 1.7e-15 87.8 317 34.1
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 3.2e-14 83.6 283 36.0
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 1.3e-12 78.2 324 34.0
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 8.7e-12 75.5 206 35.0
ECA233G0652 Erigeron canadensis HOM05D007548 ORTHO05D009527 1.1e-11 75.1 325 34.2
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 1.6e-10 71.2 282 33.7
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 1.6e-10 71.2 316 31.6
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 1.6e-10 71.2 316 31.6
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 1.6e-10 71.2 316 31.6
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 2.8e-10 70.5 282 33.3
Lalb_Chr21g0304861 Lupinus albus HOM05D007548 ORTHO05D009527 3.6e-10 70.1 317 30.3
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 6.2e-10 69.3 346 29.8
Aqoxy7G00579 Aquilegia oxysepala HOM05D007548 ORTHO05D009527 8.1e-10 68.9 363 30.3
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 5.3e-09 66.2 136 40.4
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 3.4e-08 63.5 313 31.3
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 7.6e-08 62.4 316 30.7
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 2.4e-06 57.4 259 32.0
FAN10G1395 Fragaria x ananassa HOM05D007548 ORTHO05D009527 5.4e-06 56.2 191 36.6


User provided reference genes

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