Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 8.4e-135 483.8 264 100.0
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 3.3e-131 471.9 264 98.1
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.0e-112 409.5 264 87.5
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.8e-97 359.8 261 79.3
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.5e-94 349.4 267 75.7
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 3.6e-93 345.5 267 74.9
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.2e-90 336.3 267 74.5
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.1e-89 332.4 259 75.3
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.4e-89 331.6 272 71.7
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 5.4e-89 331.6 267 73.4
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 5.7e-83 311.6 255 68.6
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 7.5e-83 311.2 255 69.4
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.8e-82 309.3 172 97.7
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 8.3e-82 307.8 257 68.1
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.4e-81 307.0 255 68.6
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 2.3e-79 299.7 263 66.9
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 6.6e-79 298.1 257 66.1
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.6e-79 297.7 255 67.1
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.1e-78 297.4 251 69.3
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.5e-78 297.0 255 67.1
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.3e-78 295.4 255 66.7
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 5.6e-78 295.0 255 66.3
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 9.5e-78 294.3 262 64.9
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 6.1e-77 291.6 249 68.3
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 1.8e-76 290.0 266 64.3
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 6.8e-76 288.1 253 65.2
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 8.9e-76 287.7 263 63.9
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.0e-75 286.6 260 64.6
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.5e-75 284.6 253 64.8
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 9.8e-75 284.3 250 66.4
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.7e-74 283.5 255 65.1
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.9e-74 282.0 255 63.9
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.8e-73 280.0 256 64.5
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 3.2e-73 279.3 255 63.9
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 9.2e-73 277.7 255 63.1
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.2e-72 277.3 258 62.8
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 3.5e-72 275.8 257 63.0
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 5.9e-72 275.0 260 62.7
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.7e-71 273.5 251 63.3
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 5.0e-71 271.9 255 63.1
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 5.0e-71 271.9 263 61.2
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 5.0e-71 271.9 254 64.6
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.1e-70 270.8 249 65.1
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.9e-70 270.0 255 62.4
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.5e-70 269.6 247 62.3
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 5.6e-70 268.5 287 57.8
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.6e-69 266.9 259 62.9
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.1e-69 266.5 258 59.7
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 2.8e-69 266.2 254 62.2
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 2.8e-69 266.2 266 63.2
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.7e-69 265.4 258 59.3
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 6.2e-69 265.0 255 62.0
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 6.2e-69 265.0 251 61.8
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.4e-68 263.8 254 60.6
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.3e-68 263.1 255 60.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 2.3e-68 263.1 256 61.7
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 4.0e-68 262.3 253 61.3
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 4.0e-68 262.3 251 60.6
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.5e-67 260.4 253 63.6
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-67 260.4 258 58.9
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 1.5e-67 260.4 254 61.4
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 2.0e-67 260.0 252 61.1
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.6e-67 259.6 291 54.6
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 3.4e-67 259.2 246 62.2
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 3.4e-67 259.2 251 61.4
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 5.8e-67 258.5 254 61.4
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 7.5e-67 258.1 252 61.1
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 7.5e-67 258.1 319 54.5
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 9.8e-67 257.7 252 59.1
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 2.2e-66 256.5 255 60.8
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.2e-66 256.5 230 66.1
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.9e-65 253.4 244 61.5
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.9e-65 253.4 228 66.2
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 5.4e-65 251.9 252 59.9
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 7.0e-65 251.5 250 58.4
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 9.2e-65 251.1 246 61.0
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.2e-64 250.8 253 57.3
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.6e-64 250.4 247 60.3
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 2.0e-64 250.0 251 59.0
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.7e-64 249.6 248 60.1
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 6.0e-64 248.4 251 58.6
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 6.0e-64 248.4 254 60.6
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 1.7e-63 246.9 203 71.4
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 3.9e-63 245.7 258 57.0
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 8.6e-63 244.6 258 57.8
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.1e-62 244.2 251 59.0
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.5e-62 243.8 252 58.7
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 2.5e-62 243.0 251 59.4
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 3.3e-62 242.7 254 56.7
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 4.3e-62 242.3 255 56.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 7.3e-62 241.5 254 56.3
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 7.3e-62 241.5 262 57.6
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.6e-61 240.4 254 57.5
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.4e-60 237.3 253 58.5
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 2.3e-60 236.5 247 58.3
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 1.2e-59 234.2 253 58.5
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 2.6e-59 233.0 166 76.5
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 3.4e-59 232.6 248 58.5
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.7e-58 230.3 160 78.1
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 4.9e-58 228.8 263 55.9
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 8.3e-58 228.0 254 56.3
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.1e-57 227.6 260 58.5
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.4e-57 227.3 251 56.2
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 3.2e-57 226.1 261 58.2
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 5.4e-57 225.3 252 55.6
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 2.7e-56 223.0 224 59.8
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 4.6e-56 222.2 251 55.4
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.6e-56 222.2 310 47.1
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 7.8e-56 221.5 253 55.7
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.7e-55 220.3 379 43.0
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.3e-55 219.9 254 54.7
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.3e-55 219.9 148 79.7
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.1e-54 217.6 254 53.1
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.8e-53 213.0 191 67.0
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 5.8e-51 205.3 253 56.1
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.4e-49 199.9 273 49.5
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.1e-46 191.0 254 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 7.3e-46 188.3 276 42.4
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 2.0e-43 180.3 247 46.6
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 3.2e-41 172.9 220 50.9
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 6.0e-40 168.7 235 47.7
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.1e-38 164.5 255 45.5
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.6e-37 160.6 196 54.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 5.8e-35 152.1 100 80.0
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 9.9e-35 151.4 182 53.3
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.3e-34 151.0 173 54.9
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.3e-31 141.0 97 73.2
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.3e-31 141.0 268 44.0
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.6e-29 134.0 175 52.6
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.1e-29 133.7 134 56.7
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 3.1e-20 103.2 123 47.2
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 9.0e-20 101.7 106 57.5
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 3.8e-18 96.3 65 78.5
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 4.6e-16 89.4 226 39.4
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.1e-15 85.9 68 63.2
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 3.3e-14 83.2 150 41.3
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.3e-13 81.3 54 81.5
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 8.2e-13 78.6 132 41.7
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 9.0e-12 75.1 102 46.1
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 9.0e-12 75.1 63 65.1
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.0e-11 73.9 137 41.6
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 6.5e-10 68.9 169 32.5
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 4.2e-09 66.2 91 45.1
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.1e-07 59.3 36 72.2
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 2.5e-06 57.0 110 40.9


User provided reference genes

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