Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 0.0e+00 1395.9 722 100.0
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 0.0e+00 1241.5 720 92.4
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 0.0e+00 1160.6 737 86.6
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 6.1e-220 768.1 776 63.8
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.5e-207 725.3 763 62.3
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.3e-206 723.0 777 62.4
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 2.0e-154 550.4 762 52.6
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.4e-136 491.1 785 49.6
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 9.7e-117 425.2 778 43.1
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 2.6e-114 417.2 774 41.5
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 6.8e-110 402.5 762 41.5
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 9.8e-109 398.7 759 44.3
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 2.2e-108 397.5 749 41.8
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 2.0e-106 391.0 775 43.2
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 3.5e-106 390.2 791 40.8
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 3.2e-104 383.6 806 39.6
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.2e-104 383.6 757 40.2
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 9.8e-101 372.1 740 41.1
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.1e-99 368.6 766 41.8
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.6e-98 364.8 798 39.8
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 2.7e-98 364.0 758 40.4
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.7e-97 361.3 769 40.7
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.8e-94 351.3 800 39.9
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.0e-94 350.1 761 40.2
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 8.3e-92 342.4 803 39.4
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 1.8e-91 341.3 786 38.7
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 4.1e-91 340.1 621 42.8
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 2.0e-90 337.8 771 37.0
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 3.5e-90 337.0 780 38.6
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.7e-89 334.7 786 38.9
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 2.1e-87 327.8 796 37.7
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 6.8e-86 322.8 742 39.4
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.0e-85 321.2 823 38.5
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 4.9e-84 316.6 648 39.0
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 2.4e-83 314.3 777 38.2
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.2e-83 313.9 715 38.3
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.1e-83 313.5 739 38.2
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 1.2e-82 312.0 784 36.0
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.0e-81 307.4 712 38.5
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.0e-81 307.4 712 38.3
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.0e-81 307.4 712 38.3
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 3.0e-81 307.4 832 36.8
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 1.1e-80 305.4 741 36.7
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 1.5e-80 305.1 720 38.1
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 4.3e-80 303.5 713 37.6
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 7.3e-80 302.8 611 41.2
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 8.1e-79 299.3 719 37.7
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.1e-78 297.4 719 37.6
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 3.4e-77 293.9 773 36.5
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 2.2e-76 291.2 796 37.1
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 6.4e-76 289.7 769 36.8
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 2.4e-75 287.7 706 39.7
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.2e-75 287.3 738 37.0
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 5.4e-75 286.6 844 34.2
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.7e-73 281.6 753 34.9
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 2.3e-73 281.2 713 37.6
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 3.0e-73 280.8 771 36.3
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 8.6e-73 279.3 779 36.6
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 1.1e-72 278.9 731 36.3
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 3.3e-72 277.3 786 37.0
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 2.1e-71 274.6 788 36.0
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.8e-71 274.2 757 35.0
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 2.3e-70 271.2 757 35.7
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 3.1e-70 270.8 742 36.1
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 4.0e-70 270.4 546 42.9
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 6.8e-70 269.6 796 34.8
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.0e-69 268.1 758 35.0
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 1.9e-67 261.5 800 34.4
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 5.4e-67 260.0 511 44.8
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 3.5e-66 257.3 732 35.4
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.6e-66 256.9 765 34.1
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 6.0e-66 256.5 763 34.5
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 5.1e-65 253.4 755 34.0
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 5.1e-65 253.4 772 33.9
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.1e-64 252.3 756 35.6
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.5e-64 251.9 765 33.7
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.3e-64 250.8 758 34.6
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 6.2e-63 246.5 716 37.3
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 6.2e-63 246.5 686 38.6
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 1.1e-62 245.7 759 35.2
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 1.4e-62 245.4 747 33.9
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 4.0e-62 243.8 769 33.0
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 5.2e-62 243.4 715 36.8
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 5.2e-62 243.4 763 33.4
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 6.8e-62 243.0 712 36.1
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 4.4e-61 240.4 715 35.8
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.3e-60 238.8 776 32.9
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 3.8e-60 237.3 762 35.7
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 4.9e-60 236.9 729 35.8
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 1.1e-59 235.7 610 37.5
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 1.4e-59 235.3 764 34.7
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 2.7e-58 231.1 771 32.6
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.0e-58 229.9 575 35.0
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.7e-57 228.4 725 34.1
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 5.6e-56 223.4 776 33.2
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 3.6e-55 220.7 753 32.8
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.4e-54 218.8 633 36.0
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 3.1e-54 217.6 777 31.7
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 6.9e-54 216.5 762 30.8
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.5e-53 215.3 629 36.9
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 3.4e-53 214.2 759 33.5
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 5.8e-53 213.4 789 32.7
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.3e-52 212.2 782 32.5
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 2.2e-52 211.5 729 33.6
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.9e-52 210.3 753 30.3
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 8.4e-52 209.5 706 31.0
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 1.7e-49 201.8 748 31.8
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 1.5e-48 198.7 684 34.1
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 7.3e-48 196.4 727 33.3
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.6e-47 195.3 752 32.3
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.8e-47 194.5 702 32.1
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.4e-46 192.2 665 34.7
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 6.9e-46 189.9 778 30.2
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.3e-44 185.7 749 30.4
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 5.5e-43 180.3 749 30.2
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 3.5e-42 177.6 712 31.6
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.0e-41 174.5 663 31.1
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.4e-38 165.6 672 30.5
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.6e-37 161.4 292 40.4
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 4.9e-36 157.1 693 31.2
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.4e-35 155.6 706 29.0
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 4.2e-35 154.1 763 28.2
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.0e-33 149.4 727 29.4
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.3e-33 149.1 703 30.2
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.3e-31 142.5 654 29.5
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.2e-29 136.0 669 28.8
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.9e-27 128.6 721 27.6
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.8e-25 122.1 336 39.0
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 8.7e-25 119.8 158 44.3
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 4.3e-24 117.5 684 27.9
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 4.3e-24 117.5 193 52.3
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 3.7e-23 114.4 126 50.0
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 8.2e-23 113.2 768 27.9
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 3.4e-21 107.8 794 24.6
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 1.3e-20 105.9 679 28.6
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 6.1e-18 97.1 390 30.5
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 1.0e-17 96.3 445 32.4
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 1.4e-17 95.9 423 32.9
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 3.0e-17 94.7 557 28.5
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 5.1e-17 94.0 446 32.3
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.7e-17 93.6 299 34.8
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 2.5e-16 91.7 446 32.1
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 2.5e-16 91.7 351 35.6
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 5.7e-16 90.5 444 31.3
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.3e-15 89.4 569 27.8
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 2.8e-15 88.2 336 30.4
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 3.7e-15 87.8 341 29.9
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 1.4e-14 85.9 410 28.0
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 2.4e-14 85.1 442 30.1
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 4.1e-14 84.3 335 30.4
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 4.1e-14 84.3 107 54.2
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 2.0e-13 82.0 106 50.9
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 3.4e-13 81.3 496 29.8
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 2.2e-12 78.6 241 32.0
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 2.9e-12 78.2 406 30.5
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.5e-11 75.1 418 28.9
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 2.5e-11 75.1 645 24.8
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 5.5e-11 73.9 156 32.7
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 1.2e-10 72.8 823 25.3
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 2.7e-10 71.6 154 32.5
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 6.1e-10 70.5 390 30.0
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 1.4e-09 69.3 206 31.6
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 1.8e-09 68.9 402 26.9
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 1.8e-09 68.9 402 26.9
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 1.8e-09 68.9 234 32.9
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 2.3e-09 68.6 390 29.7
FAN11G3380 Fragaria x ananassa HOM05D002515 ORTHO05D002722 3.0e-09 68.2 159 29.6
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 3.9e-09 67.8 388 29.1
FvH4_3g36010 Fragaria vesca HOM05D002515 ORTHO05D002722 8.8e-09 66.6 156 29.5
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.5e-08 65.9 251 33.5
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 2.6e-08 65.1 475 28.2
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 3.3e-08 64.7 388 28.4
FAN16G3741 Fragaria x ananassa HOM05D002515 ORTHO05D002722 5.7e-08 63.9 156 28.8
FAN21G0377 Fragaria x ananassa HOM05D002515 ORTHO05D006653 5.7e-08 63.9 214 26.6
Carub.0001s1825 Capsella rubella HOM05D001693 ORTHO05D001588 1.3e-07 62.8 215 26.0
FAN25G0844 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.3e-07 62.8 217 27.2
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 2.8e-07 61.6 385 23.1
RcHm_v2.0_Chr5g0064421 Rosa chinensis HOM05D002515 ORTHO05D002722 4.1e-06 57.8 138 29.7
Lj2g0000752 Lotus japonicus HOM05D001693 ORTHO05D001588 5.3e-06 57.4 179 26.3


User provided reference genes

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