Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 2.4e-133 478.8 237 100.0
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 5.4e-133 477.6 237 99.6
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 8.4e-126 453.8 236 95.3
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 7.8e-124 447.2 240 92.5
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.5e-119 433.0 233 88.8
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 1.9e-114 416.0 238 86.6
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.2e-103 380.2 196 92.3
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 9.3e-101 370.5 237 75.5
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 1.2e-100 370.2 241 75.1
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 1.9e-98 362.8 237 74.7
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 3.7e-97 358.6 237 74.3
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 8.2e-97 357.5 237 74.7
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 1.4e-96 356.7 237 73.4
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 2.4e-96 355.9 240 74.2
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 5.3e-96 354.8 237 72.6
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 9.0e-96 354.0 237 73.4
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 9.0e-96 354.0 235 74.5
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.2e-95 353.6 236 74.2
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.2e-95 353.6 237 73.8
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 1.5e-95 353.2 238 75.6
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 1.5e-95 353.2 237 74.3
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 2.0e-95 352.8 237 73.4
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 2.0e-95 352.8 237 74.7
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 2.6e-95 352.4 237 73.8
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 3.4e-95 352.1 237 75.5
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 4.5e-95 351.7 235 74.0
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 5.9e-95 351.3 237 73.0
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 1.0e-94 350.5 238 72.3
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 1.0e-94 350.5 237 72.6
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.0e-94 350.5 241 73.0
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 1.0e-94 350.5 244 72.1
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 1.3e-94 350.1 240 72.5
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 2.2e-94 349.4 237 74.7
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 5.0e-94 348.2 241 72.6
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 6.5e-94 347.8 238 71.8
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 6.5e-94 347.8 234 72.2
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 8.5e-94 347.4 241 70.5
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.9e-93 346.3 237 72.6
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 7.2e-93 344.4 238 72.7
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 7.2e-93 344.4 237 72.6
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 9.4e-93 344.0 230 73.5
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 1.2e-92 343.6 234 70.9
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 2.1e-92 342.8 233 72.1
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 2.7e-92 342.4 239 72.8
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 4.6e-92 341.7 222 73.4
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 6.1e-92 341.3 240 70.4
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.8e-91 339.7 216 76.9
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 1.8e-91 339.7 242 70.7
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.8e-91 339.7 240 70.4
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 2.3e-91 339.3 238 71.8
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 3.0e-91 339.0 307 59.6
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 3.0e-91 339.0 240 69.6
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 3.0e-91 339.0 240 70.8
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 8.8e-91 337.4 233 68.7
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 2.5e-90 335.9 239 70.3
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 4.3e-90 335.1 241 69.3
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 5.7e-90 334.7 233 71.7
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 7.4e-90 334.3 210 77.1
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 9.7e-90 334.0 216 74.1
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 9.7e-90 334.0 240 69.2
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 9.7e-90 334.0 241 69.7
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 2.2e-89 332.8 240 69.6
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 8.2e-89 330.9 216 75.0
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 8.2e-89 330.9 233 71.7
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 1.8e-88 329.7 219 72.6
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 3.1e-88 328.9 236 67.4
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 4.1e-88 328.6 241 68.9
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 4.1e-88 328.6 229 69.0
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 5.3e-88 328.2 248 66.5
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 6.9e-88 327.8 232 69.4
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 2.6e-87 325.9 196 80.6
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 3.4e-87 325.5 235 68.1
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 1.3e-86 323.6 235 67.7
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 3.8e-86 322.0 231 68.0
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 5.0e-86 321.6 219 70.8
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 6.5e-86 321.2 233 69.1
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 8.5e-86 320.9 235 67.2
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 2.5e-85 319.3 228 71.5
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 9.4e-85 317.4 228 70.6
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 1.6e-84 316.6 220 70.5
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 2.1e-84 316.2 233 65.7
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 2.7e-84 315.8 237 68.4
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 1.0e-83 313.9 221 68.8
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 1.0e-83 313.9 221 68.8
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 1.0e-83 313.9 221 68.8
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 2.3e-83 312.8 194 77.8
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 3.0e-83 312.4 219 69.9
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 5.1e-83 311.6 235 66.8
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 5.1e-83 311.6 221 68.3
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 6.7e-83 311.2 196 77.0
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 1.5e-82 310.1 223 67.7
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 1.5e-82 310.1 223 67.7
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 1.5e-82 310.1 219 69.9
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 5.7e-82 308.1 221 67.0
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 4.8e-81 305.1 230 63.0
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 2.4e-80 302.8 223 66.8
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 3.5e-79 298.9 240 64.2
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.9e-77 293.1 238 62.2
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 7.2e-77 291.2 210 68.1
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 6.1e-76 288.1 216 65.3
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 8.8e-75 284.3 200 69.5
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 8.2e-73 277.7 213 61.5
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 1.1e-72 277.3 236 58.5
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 1.3e-70 270.4 187 70.1
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 6.1e-68 261.5 197 66.0
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 2.8e-65 252.7 244 54.1
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 5.9e-63 245.0 201 62.2
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 1.0e-62 244.2 219 54.3
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 1.7e-62 243.4 198 65.2
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 1.7e-62 243.4 266 53.8
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 5.7e-58 228.4 142 76.1
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 2.2e-57 226.5 176 61.4
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 4.5e-55 218.8 221 53.4
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 1.0e-54 217.6 241 49.0
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 3.8e-54 215.7 141 74.5
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 9.8e-50 201.1 191 52.4
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 6.3e-49 198.4 125 76.8
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 3.2e-32 142.9 185 41.6
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 6.6e-30 135.2 207 40.1
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 6.0e-23 112.1 93 63.4
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 3.9e-22 109.4 202 37.1
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.2e-20 104.4 274 30.3
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 1.6e-20 104.0 240 32.5
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 7.3e-13 78.6 61 60.7
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 3.6e-12 76.3 49 69.4
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 1.4e-11 74.3 49 67.3
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 2.4e-08 63.5 34 76.5
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 1.0e-06 58.2 157 31.2


User provided reference genes

Program Settings