Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 3.9e-58 228.0 125 100.0
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 7.2e-44 180.6 123 79.7
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.2e-43 179.9 124 85.5
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 9.5e-36 153.7 125 71.2
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.0e-34 150.2 124 71.8
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.5e-33 146.4 120 67.5
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 4.4e-33 144.8 120 69.2
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 4.4e-33 144.8 120 69.2
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 6.3e-32 141.0 124 69.4
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 4.7e-27 124.8 126 58.7
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 2.3e-26 122.5 122 59.8
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 1.2e-25 120.2 122 61.5
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 3.4e-25 118.6 121 62.0
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 4.4e-25 118.2 122 62.3
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 5.8e-25 117.9 122 61.5
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 9.8e-25 117.1 127 63.0
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.3e-24 116.7 122 66.4
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.3e-24 116.7 127 50.4
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 1.3e-24 116.7 125 60.0
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 1.3e-24 116.7 127 61.4
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.7e-24 116.3 121 52.9
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.2e-24 115.9 127 59.8
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.2e-24 115.9 120 53.3
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 2.2e-24 115.9 127 58.3
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.9e-24 115.5 120 54.2
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 2.9e-24 115.5 124 57.3
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 3.7e-24 115.2 121 62.0
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 6.4e-24 114.4 121 59.5
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 1.1e-23 113.6 121 62.8
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 1.1e-23 113.6 120 58.3
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 1.1e-23 113.6 127 58.3
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 1.1e-23 113.6 126 60.3
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 2.4e-23 112.5 123 55.3
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 3.2e-23 112.1 121 60.3
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 5.4e-23 111.3 120 64.2
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 9.2e-23 110.5 127 56.7
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 9.2e-23 110.5 121 58.7
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 1.2e-22 110.2 125 62.4
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.2e-22 110.2 119 58.8
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 1.2e-22 110.2 119 57.1
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 1.6e-22 109.8 126 59.5
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 1.6e-22 109.8 124 54.8
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 1.6e-22 109.8 123 58.5
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 2.0e-22 109.4 54 88.9
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 2.0e-22 109.4 122 57.4
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 2.7e-22 109.0 129 53.5
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 4.6e-22 108.2 120 48.3
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 4.6e-22 108.2 123 52.0
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 6.0e-22 107.8 121 57.9
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 7.8e-22 107.5 120 58.3
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 7.8e-22 107.5 126 54.0
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.0e-21 107.1 122 52.5
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.3e-21 106.7 120 47.5
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 1.7e-21 106.3 120 50.0
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 1.7e-21 106.3 125 52.8
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 2.3e-21 105.9 119 58.0
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 2.3e-21 105.9 121 57.9
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 3.9e-21 105.1 121 57.9
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 3.9e-21 105.1 121 57.9
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 5.0e-21 104.8 123 48.0
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 5.0e-21 104.8 118 54.2
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 5.0e-21 104.8 122 59.0
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 6.6e-21 104.4 123 45.5
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 8.6e-21 104.0 121 52.9
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 8.6e-21 104.0 121 57.0
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 8.6e-21 104.0 123 51.2
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 1.1e-20 103.6 123 56.1
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 1.5e-20 103.2 131 53.4
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 1.5e-20 103.2 123 47.2
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 1.5e-20 103.2 123 47.2
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 1.5e-20 103.2 123 47.2
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 1.5e-20 103.2 123 47.2
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 1.5e-20 103.2 127 58.3
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.9e-20 102.8 122 56.6
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.9e-20 102.8 123 47.2
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 2.5e-20 102.4 121 50.4
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 3.3e-20 102.1 122 47.5
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 3.3e-20 102.1 120 55.0
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 3.3e-20 102.1 122 46.7
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 5.6e-20 101.3 123 47.2
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 5.6e-20 101.3 123 47.2
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 5.6e-20 101.3 123 47.2
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 5.6e-20 101.3 123 47.2
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 5.6e-20 101.3 123 47.2
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 7.3e-20 100.9 121 52.1
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 9.5e-20 100.5 119 58.8
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 9.5e-20 100.5 127 47.2
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.2e-19 100.1 110 63.6
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 1.2e-19 100.1 124 45.2
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.2e-19 100.1 118 55.1
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.2e-19 100.1 118 55.1
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.2e-19 100.1 127 47.2
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.6e-19 99.8 120 45.0
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.6e-19 99.8 110 66.4
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.6e-19 99.8 123 43.9
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 1.6e-19 99.8 128 48.4
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 2.1e-19 99.4 123 46.3
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 2.1e-19 99.4 127 55.1
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 2.8e-19 99.0 121 52.1
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 6.2e-19 97.8 120 44.2
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 6.2e-19 97.8 111 60.4
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 6.2e-19 97.8 120 54.2
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 6.2e-19 97.8 120 58.3
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.1e-18 97.1 112 47.3
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.1e-18 97.1 131 51.9
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 1.1e-18 97.1 120 50.0
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.1e-18 97.1 129 45.0
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 1.8e-18 96.3 130 46.2
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 1.8e-18 96.3 127 45.7
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.8e-18 96.3 128 43.8
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 2.3e-18 95.9 122 44.3
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 5.2e-18 94.7 122 43.4
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 5.2e-18 94.7 122 43.4
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 6.8e-18 94.4 110 57.3
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 6.8e-18 94.4 129 45.0
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 8.9e-18 94.0 120 47.5
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 8.9e-18 94.0 127 43.3
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.2e-17 93.6 126 41.3
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.2e-17 93.6 126 41.3
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.2e-17 93.6 109 59.6
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 1.2e-17 93.6 121 58.7
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 1.2e-17 93.6 125 48.8
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.5e-17 93.2 120 39.2
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 1.5e-17 93.2 110 60.0
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 2.0e-17 92.8 123 53.7
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.4e-17 92.0 125 48.8
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.4e-17 92.0 119 48.7
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.4e-17 92.0 119 48.7
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 4.4e-17 91.7 121 48.8
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 4.4e-17 91.7 120 51.7
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 5.8e-17 91.3 115 54.8
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 5.8e-17 91.3 110 58.2
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 7.5e-17 90.9 122 49.2
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 7.5e-17 90.9 122 49.2
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 7.5e-17 90.9 122 50.0
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 7.5e-17 90.9 121 53.7
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 7.5e-17 90.9 120 50.8
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 9.8e-17 90.5 109 51.4
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 1.3e-16 90.1 110 57.3
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 1.7e-16 89.7 55 78.2
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 2.2e-16 89.4 107 49.5
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 2.2e-16 89.4 120 53.3
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.9e-16 89.0 112 49.1
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 2.9e-16 89.0 120 46.7
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 3.7e-16 88.6 120 53.3
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 4.9e-16 88.2 112 47.3
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 4.9e-16 88.2 110 50.9
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 1.1e-15 87.0 118 43.2
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 1.9e-15 86.3 93 61.3
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 2.4e-15 85.9 123 43.9
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 3.2e-15 85.5 118 44.9
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 3.2e-15 85.5 118 44.9
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 3.2e-15 85.5 118 44.9
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 4.1e-15 85.1 114 54.4
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 4.1e-15 85.1 114 51.8
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 4.1e-15 85.1 112 50.9
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 7.0e-15 84.3 109 53.2
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 7.0e-15 84.3 109 53.2
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 9.2e-15 84.0 121 51.2
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 9.2e-15 84.0 108 55.6
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 1.2e-14 83.6 120 52.5
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 2.1e-14 82.8 108 54.6
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 2.7e-14 82.4 109 57.8
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 6.0e-14 81.3 111 43.2
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 1.3e-13 80.1 113 54.0
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 1.3e-13 80.1 108 51.9
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 1.1e-12 77.0 110 40.9
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.9e-12 76.3 110 43.6
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 9.5e-12 73.9 109 45.9
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.6e-11 73.2 51 56.9
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.1e-10 70.5 41 70.7
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 2.0e-09 66.2 111 39.6
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.7e-08 63.2 81 39.5
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 1.7e-08 63.2 45 64.4
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 3.7e-08 62.0 153 30.1
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 9.2e-07 57.4 44 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 1.2e-06 57.0 145 33.1


User provided reference genes

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