Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 0.0e+00 1254.2 633 100.0
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 0.0e+00 1191.0 633 94.9
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 5.4e-305 1050.4 633 86.4
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 1.4e-281 972.6 630 79.8
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 2.1e-280 968.8 630 79.0
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 1.2e-208 730.3 488 78.1
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 5.6e-193 678.3 633 60.0
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 4.0e-191 672.2 585 59.5
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 4.6e-187 658.7 629 55.6
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 2.8e-184 649.4 630 56.0
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 1.3e-181 640.6 628 55.1
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.6e-179 633.6 558 59.9
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 4.3e-177 625.5 595 55.1
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.4e-175 620.5 620 53.1
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 2.6e-174 616.3 589 54.0
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 7.6e-174 614.8 595 54.8
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 1.7e-173 613.6 592 53.0
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 2.9e-173 612.8 598 53.3
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 1.1e-172 610.9 586 55.1
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 2.3e-170 603.2 584 54.5
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 1.6e-168 597.0 627 52.2
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 6.2e-168 595.1 595 53.3
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 9.0e-167 591.3 574 52.8
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 1.5e-166 590.5 573 52.5
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 1.5e-166 590.5 634 51.1
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 2.6e-166 589.7 621 51.7
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 9.9e-166 587.8 588 52.9
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 2.4e-164 583.2 634 50.3
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 4.2e-164 582.4 652 49.4
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 7.1e-164 581.6 635 50.9
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 4.6e-163 578.9 582 54.1
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 1.0e-162 577.8 574 52.3
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.1e-161 574.3 623 49.3
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 4.3e-161 572.4 597 49.1
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 7.4e-161 571.6 623 48.5
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 9.6e-161 571.2 616 51.0
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 1.1e-159 567.8 624 50.2
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 1.8e-159 567.0 602 50.3
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 6.9e-159 565.1 626 50.0
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 1.2e-158 564.3 602 49.7
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.2e-158 564.3 606 50.2
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 7.6e-158 561.6 593 51.3
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 2.5e-156 556.6 591 50.4
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 5.5e-156 555.4 595 51.1
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 1.2e-155 554.3 571 52.2
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 2.1e-155 553.5 598 49.8
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 3.5e-155 552.7 657 48.6
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 3.5e-155 552.7 577 50.8
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 1.0e-154 551.2 594 50.3
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 2.3e-154 550.1 580 51.2
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 2.3e-154 550.1 599 50.4
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 3.9e-154 549.3 605 49.9
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 8.7e-154 548.1 579 50.6
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 1.9e-153 547.0 597 49.4
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.9e-153 547.0 597 50.1
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 2.5e-153 546.6 589 49.6
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 3.3e-153 546.2 577 51.0
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 4.3e-153 545.8 597 49.7
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 9.6e-153 544.7 573 50.3
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 1.6e-152 543.9 599 49.6
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.1e-151 541.2 596 50.3
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 4.1e-151 539.3 580 49.1
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 6.9e-151 538.5 598 49.5
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 9.0e-151 538.1 549 51.5
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 1.2e-150 537.7 587 48.9
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 1.5e-150 537.3 596 49.0
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 2.0e-150 537.0 576 50.2
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 5.9e-150 535.4 598 49.2
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 5.9e-150 535.4 570 50.9
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 2.2e-149 533.5 572 50.2
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 3.8e-149 532.7 601 48.9
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 5.5e-148 528.9 690 44.2
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.6e-147 527.3 570 50.0
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 4.8e-144 515.8 690 43.9
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 6.3e-144 515.4 594 49.3
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 1.1e-143 514.6 692 43.9
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 6.9e-143 511.9 453 59.4
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 3.8e-141 506.1 634 46.4
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 2.0e-137 493.8 498 51.4
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 3.1e-135 486.5 592 45.8
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 2.1e-131 473.8 424 60.1
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 3.3e-129 466.5 641 44.6
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 2.4e-127 460.3 573 46.8
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 7.0e-127 458.8 314 76.4
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 1.5e-124 451.1 662 39.0
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.8e-122 444.1 448 51.1
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 2.8e-120 436.8 391 57.3
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 9.1e-119 431.8 557 44.3
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 1.3e-117 427.9 417 52.3
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 9.4e-116 421.8 461 48.8
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 2.2e-109 400.6 412 52.9
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 6.5e-109 399.1 433 51.3
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 2.5e-108 397.1 419 47.3
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 4.7e-107 392.9 419 48.2
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 4.0e-106 389.8 627 38.4
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 4.4e-105 386.3 500 42.8
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 5.7e-105 386.0 392 52.6
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 9.2e-103 378.6 419 48.0
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 7.7e-102 375.6 234 81.2
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 1.7e-101 374.4 418 50.0
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 1.0e-85 322.0 588 35.7
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.8e-82 311.2 603 34.8
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 1.2e-73 282.0 580 34.1
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 2.8e-51 207.6 582 26.3
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 7.6e-41 172.9 210 42.9
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 4.9e-40 170.2 177 59.9
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 8.4e-40 169.5 269 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 5.1e-37 160.2 617 27.7
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 3.3e-36 157.5 196 42.3
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 8.7e-29 132.9 225 35.1
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.5e-28 132.1 312 33.3
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 6.3e-27 126.7 158 46.2
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 2.9e-24 117.9 213 33.8
CAN.G404.26 Capsicum annuum HOM05D006452 ORTHO05D008068 7.2e-23 113.2 254 33.9
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 2.7e-22 111.3 118 56.8
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 1.8e-18 98.6 110 47.3
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 6.9e-18 96.7 434 27.4
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.0e-13 82.8 147 35.4
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.8e-13 82.0 66 62.1
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 3.0e-13 81.3 95 49.5
CAN.G354.1 Capsicum annuum HOM05D006452 ORTHO05D008068 5.2e-13 80.5 66 69.7
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 2.5e-07 61.6 70 50.0
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.5e-07 61.6 70 50.0
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.6e-06 58.9 62 48.4


User provided reference genes

Program Settings