Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 4.2e-144 515.4 427 100.0
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 5.9e-130 468.4 433 91.9
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 9.2e-107 391.3 429 81.6
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.6e-105 385.2 432 80.8
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.2e-103 378.6 381 82.4
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.8e-102 377.1 428 81.3
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.7e-92 344.0 385 78.4
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.7e-90 336.7 385 76.6
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 3.3e-88 329.7 385 74.3
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 9.0e-86 321.6 387 76.0
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.5e-85 320.9 420 70.7
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.7e-84 317.4 385 76.1
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 6.4e-84 315.5 388 71.4
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 8.4e-84 315.1 382 73.8
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.4e-83 313.5 391 70.3
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 3.2e-83 313.2 382 73.8
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.5e-82 309.7 382 69.6
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.9e-81 306.2 366 75.1
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.5e-80 304.3 379 69.4
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 4.3e-80 302.8 382 74.3
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 5.6e-80 302.4 392 67.6
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 7.3e-80 302.0 379 72.8
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.3e-79 301.2 385 69.9
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.1e-79 300.4 379 72.8
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.8e-79 300.1 379 72.6
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.6e-79 299.7 386 72.5
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 8.1e-79 298.5 378 71.7
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 8.1e-79 298.5 378 71.7
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 2.4e-78 297.0 385 68.1
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 4.0e-78 296.2 384 72.7
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 9.0e-78 295.0 383 71.0
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.2e-77 294.7 382 70.9
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.5e-77 294.3 385 72.5
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 3.4e-77 293.1 383 70.2
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 5.8e-77 292.4 382 70.2
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 5.8e-77 292.4 387 68.5
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.3e-76 291.2 383 71.8
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.7e-76 290.8 386 71.2
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.2e-76 290.4 418 67.2
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.8e-76 289.7 384 71.4
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.8e-76 289.7 382 67.5
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.9e-75 287.3 382 69.1
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 2.4e-75 287.0 379 69.7
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.1e-75 285.4 424 65.8
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 9.3e-75 285.0 383 70.2
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 1.2e-74 284.6 388 67.5
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 3.5e-74 283.1 386 64.2
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 4.6e-74 282.7 320 75.6
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 6.0e-74 282.3 382 68.6
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-73 281.2 390 70.5
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.8e-73 280.8 386 69.2
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 6.7e-73 278.9 386 71.2
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 8.7e-73 278.5 322 73.9
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 8.7e-73 278.5 382 69.9
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.5e-72 277.7 385 68.8
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.9e-72 277.3 386 69.7
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.5e-72 276.9 390 70.3
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 3.3e-72 276.6 383 67.4
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 4.3e-72 276.2 357 73.7
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 7.4e-72 275.4 386 71.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 7.4e-72 275.4 386 72.3
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 9.6e-72 275.0 383 70.0
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.3e-71 274.6 385 73.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.1e-71 273.9 387 68.0
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.1e-71 273.9 385 66.0
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 2.8e-71 273.5 384 72.4
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 3.7e-71 273.1 433 59.8
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 2.4e-70 270.4 386 63.5
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 4.0e-70 269.6 389 65.0
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 6.9e-70 268.9 351 70.7
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 9.0e-70 268.5 385 66.8
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 3.4e-69 266.5 387 69.5
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.5e-69 266.2 176 93.8
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 5.8e-69 265.8 386 65.8
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.0e-68 265.0 385 67.8
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.9e-68 263.5 384 68.0
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 6.4e-68 262.3 379 71.2
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.9e-67 260.8 386 65.5
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 3.2e-67 260.0 374 69.0
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.2e-67 259.6 379 71.0
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 4.2e-67 259.6 382 68.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.5e-67 259.2 427 62.5
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 2.1e-66 257.3 383 68.7
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 7.9e-66 255.4 384 69.5
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.3e-65 254.6 383 70.2
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.8e-65 254.2 386 67.4
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.3e-65 253.8 363 70.2
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 5.1e-65 252.7 384 65.9
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.1e-64 251.5 322 73.0
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.5e-64 251.1 353 69.4
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.9e-64 250.8 330 70.0
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 3.3e-64 250.0 386 64.5
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 5.7e-64 249.2 413 61.0
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.3e-63 248.1 366 65.0
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.3e-63 248.1 391 63.9
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.4e-62 244.6 379 66.2
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 3.1e-62 243.4 381 67.7
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 4.0e-62 243.0 385 67.3
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 5.3e-62 242.7 371 69.5
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 4.5e-61 239.6 389 67.9
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.5e-61 239.6 386 61.7
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.1e-59 235.0 387 64.1
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.9e-59 234.2 187 63.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 9.3e-59 231.9 386 64.5
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.9e-58 228.8 392 64.0
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.9e-57 226.5 386 66.6
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.9e-57 226.5 392 63.5
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 5.1e-57 226.1 391 61.1
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 5.1e-57 226.1 386 62.7
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 6.7e-57 225.7 387 62.5
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.9e-56 224.2 390 63.3
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.9e-56 224.2 390 63.3
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.3e-56 223.4 391 62.1
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.3e-56 223.4 391 62.1
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.3e-56 223.4 391 62.1
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 8.2e-55 218.8 385 67.0
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.1e-54 218.4 390 62.3
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.8e-54 217.6 380 62.1
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.4e-54 217.2 388 61.1
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 3.1e-54 216.9 390 66.4
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 3.1e-54 216.9 390 66.7
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 5.3e-54 216.1 389 57.1
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 2.0e-53 214.2 383 67.1
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 6.5e-52 209.1 345 63.2
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.1e-51 208.4 389 65.0
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.5e-51 207.2 399 59.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 7.2e-51 205.7 374 43.3
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 3.6e-50 203.4 391 59.3
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.8e-49 201.1 380 65.8
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 5.7e-48 196.1 272 72.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.9e-43 181.0 386 61.4
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 7.9e-42 175.6 338 54.1
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 5.7e-40 169.5 388 61.1
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 5.7e-40 169.5 376 61.4
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.3e-39 168.3 388 60.8
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.3e-39 168.3 388 60.8
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 6.3e-39 166.0 196 49.0
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 9.1e-38 162.2 384 58.9
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.5e-37 161.4 169 49.7
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 5.9e-37 159.5 190 46.8
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 7.7e-37 159.1 284 71.8
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 6.5e-36 156.0 400 57.0
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 6.5e-36 156.0 290 65.9
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 8.5e-36 155.6 386 39.4
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.5e-35 154.8 396 50.0
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.5e-35 152.9 372 60.8
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 6.1e-34 149.4 403 56.3
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-33 148.3 330 62.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.7e-31 141.4 401 57.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 6.3e-31 139.4 278 69.1
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.4e-30 138.3 258 67.4
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.4e-30 137.5 195 43.1
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.9e-27 127.9 196 39.3
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 7.2e-27 125.9 392 48.7
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.0e-24 117.9 404 49.3
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.1e-22 112.1 242 77.3
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 2.5e-19 100.9 87 56.3
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.2e-18 98.6 107 60.7
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.7e-18 96.7 86 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 4.0e-17 93.6 193 33.7
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 5.2e-17 93.2 120 43.3
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 2.8e-15 87.4 95 49.5
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 7.0e-14 82.8 175 39.4
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.2e-13 82.0 247 58.3
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.9e-12 77.4 86 53.5
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 8.9e-09 65.9 49 59.2
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.2e-07 61.2 49 55.1
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 3.7e-07 60.5 45 57.8
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-06 58.5 44 56.8


User provided reference genes

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