Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.1e-217 760.4 631 100.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.6e-182 642.9 609 79.5
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.2e-149 533.5 554 77.3
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 9.1e-95 352.1 557 48.5
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 6.4e-64 249.6 334 53.0
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.5e-60 237.7 336 48.2
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.8e-58 231.5 368 42.7
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 7.6e-57 226.1 332 52.4
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.3e-56 225.3 339 49.0
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.8e-56 223.8 318 46.9
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 6.0e-54 216.5 328 51.8
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 3.9e-53 213.8 328 51.5
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 3.6e-51 207.2 349 46.4
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.7e-46 191.0 551 37.0
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 7.9e-46 189.5 343 46.6
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 1.5e-44 185.3 328 45.1
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 9.6e-44 182.6 335 43.9
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.6e-43 181.8 330 44.8
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.8e-43 181.0 334 46.4
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 6.2e-43 179.9 336 44.9
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 6.2e-43 179.9 335 46.9
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 8.1e-43 179.5 348 42.5
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.8e-42 178.3 331 45.3
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 3.1e-42 177.6 336 46.7
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 5.3e-42 176.8 334 44.9
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 5.3e-42 176.8 339 45.4
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.2e-41 175.6 365 39.2
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.2e-41 175.6 91 92.3
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 7.6e-41 172.9 357 40.6
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 9.9e-41 172.6 328 42.7
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 8.4e-40 169.5 337 35.3
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.4e-39 168.7 336 43.8
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 2.4e-39 167.9 329 43.8
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 3.2e-39 167.5 256 50.8
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.2e-39 167.2 327 44.6
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 2.1e-38 164.9 323 43.3
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 4.6e-38 163.7 332 42.8
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 6.0e-38 163.3 335 43.3
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 3.9e-37 160.6 238 42.9
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 3.9e-37 160.6 346 41.3
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 3.9e-37 160.6 322 41.3
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 5.1e-37 160.2 329 39.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 8.7e-37 159.5 347 45.5
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 8.7e-37 159.5 325 42.5
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-36 159.1 339 37.2
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.9e-36 158.3 339 40.1
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 2.5e-36 157.9 329 34.7
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 9.6e-36 156.0 322 39.1
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 2.8e-35 154.5 333 44.1
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 2.8e-35 154.5 303 45.9
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 4.8e-35 153.7 554 33.0
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.2e-35 153.3 327 46.2
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 6.2e-35 153.3 343 41.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 6.2e-35 153.3 342 41.2
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 4.0e-34 150.6 206 41.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 5.3e-34 150.2 343 41.4
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 9.0e-34 149.4 320 41.2
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.0e-33 148.3 326 37.7
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.6e-33 147.9 342 40.9
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.3e-32 145.6 240 50.0
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.2e-32 144.8 326 43.3
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 4.9e-32 143.7 341 41.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.1e-31 142.5 335 41.2
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 1.1e-31 142.5 320 40.3
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 3.2e-31 141.0 332 38.6
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 4.2e-31 140.6 337 41.5
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 4.2e-31 140.6 208 51.4
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 9.3e-31 139.4 345 40.3
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 2.7e-30 137.9 290 41.7
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 1.0e-29 136.0 305 41.0
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 8.7e-29 132.9 330 41.2
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 2.5e-28 131.3 318 39.9
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 5.7e-28 130.2 332 34.9
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 7.4e-28 129.8 211 40.8
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 3.4e-25 120.9 318 38.4
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 4.5e-25 120.6 327 37.6
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 6.5e-24 116.7 328 39.0
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 3.2e-23 114.4 550 28.9
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.6e-22 112.1 319 31.0
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.6e-22 112.1 319 31.0
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 2.3e-21 108.2 317 29.7
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.3e-21 108.2 116 48.3
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 3.0e-21 107.8 316 29.7
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 3.0e-21 107.8 327 27.5
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 3.0e-21 107.8 331 36.3
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 3.9e-21 107.5 322 29.2
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 3.9e-21 107.5 326 30.7
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.7e-21 106.7 331 30.5
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 6.7e-21 106.7 329 29.5
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 6.7e-21 106.7 78 60.3
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.1e-20 105.9 210 38.1
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 9.7e-20 102.8 185 37.3
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 1.3e-19 102.4 329 28.6
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 1.6e-19 102.1 221 34.8
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 2.2e-19 101.7 210 36.2
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 8.2e-19 99.8 192 49.5
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 3.1e-18 97.8 210 35.7
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 5.3e-18 97.1 111 50.5
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.0e-17 95.1 171 52.6
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 2.0e-17 95.1 334 34.7
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 4.5e-17 94.0 320 32.5
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.5e-17 94.0 112 43.8
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 7.7e-17 93.2 129 42.6
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.3e-16 92.4 116 44.8
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 4.2e-15 87.4 289 36.3
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 6.1e-14 83.6 189 31.7
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.4e-13 82.4 167 41.3
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.8e-13 82.0 395 27.6
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 2.3e-13 81.6 302 38.1
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 2.3e-13 81.6 167 36.5
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.7e-12 77.0 74 56.8
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 5.7e-12 77.0 308 36.0
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.7e-11 75.5 112 36.6
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 8.2e-11 73.2 114 36.0
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 3.1e-10 71.2 156 31.4
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 5.3e-10 70.5 156 30.8
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 6.9e-10 70.1 69 49.3
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 6.9e-10 70.1 92 39.1
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.2e-09 69.3 44 65.9
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 7.7e-09 66.6 137 36.5
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 7.7e-09 66.6 76 43.4
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.0e-08 66.2 71 46.5
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 1.0e-08 66.2 46 60.9
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 1.3e-08 65.9 171 32.7
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.2e-08 65.1 94 40.4
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 2.9e-08 64.7 401 25.9
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 3.8e-08 64.3 77 40.3
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 3.8e-08 64.3 75 42.7
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.5e-08 63.5 45 66.7
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 6.5e-08 63.5 125 36.0
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 8.5e-08 63.2 75 41.3
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.9e-07 62.0 82 43.9
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.2e-07 61.2 103 35.9
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 4.2e-07 60.8 68 39.7
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 4.2e-07 60.8 79 36.7
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 4.2e-07 60.8 47 68.1
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 5.5e-07 60.5 82 45.1
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 5.5e-07 60.5 52 55.8
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 7.2e-07 60.1 79 36.7
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 7.2e-07 60.1 94 40.4
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 9.4e-07 59.7 71 42.3
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 9.4e-07 59.7 45 62.2
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 1.2e-06 59.3 72 41.7
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 1.2e-06 59.3 72 41.7
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.2e-06 59.3 75 44.0
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.2e-06 59.3 75 44.0
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 1.6e-06 58.9 70 40.0
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 1.6e-06 58.9 72 41.7
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 2.1e-06 58.5 72 41.7
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 2.7e-06 58.2 92 40.2
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 2.7e-06 58.2 32 71.9
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.6e-06 57.8 73 38.4
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 3.6e-06 57.8 72 41.7
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 3.6e-06 57.8 114 33.3
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 4.7e-06 57.4 72 40.3
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 4.7e-06 57.4 37 64.9
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 4.7e-06 57.4 107 37.4
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 4.7e-06 57.4 32 75.0
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 6.1e-06 57.0 74 39.2
Os04g0510600 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 7.9e-06 56.6 92 37.0


User provided reference genes

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