Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g001650 Solanum pennellii HOM05D010441 ORTHO05D011509 9.0e-257 889.8 465 100.0
Solyc03g005640.1 Solanum lycopersicum HOM05D010441 ORTHO05D011509 1.2e-240 836.3 463 93.3
Nitab4.5_0007134g0010 Nicotiana tabacum HOM05D010441 ORTHO05D011509 4.2e-121 439.1 487 55.0
Nitab4.5_0001443g0070 Nicotiana tabacum HOM05D010441 ORTHO05D011509 2.8e-93 346.7 507 46.4
Nitab4.5_0000822g0020 Nicotiana tabacum HOM05D010441 ORTHO05D011509 4.9e-77 292.7 477 43.4
Nitab4.5_0003268g0070 Nicotiana tabacum HOM05D010441 ORTHO05D011509 4.3e-73 279.6 447 44.1
Dinv41798 Davidia involucrata HOM05D013564 ORTHO05D011509 4.3e-49 199.9 422 34.6
DCAR_003784 Daucus carota HOM05D013564 ORTHO05D011509 1.5e-46 191.4 480 30.6
Oeu011226.1 Olea europaea HOM05D013564 ORTHO05D011509 1.3e-45 188.3 405 33.8
CSS0044123 Camellia sinensis var. sinensis HOM05D013564 ORTHO05D011509 4.6e-43 179.9 449 31.6
TAR365G1119 Trochodendron aralioides HOM05D010441 ORTHO05D011509 1.1e-36 158.7 460 28.3
TAR216G0007 Trochodendron aralioides HOM05D010441 ORTHO05D011509 2.4e-36 157.5 452 27.9
Migut.G00478 Erythranthe guttata HOM05D013564 ORTHO05D011509 4.6e-35 153.3 427 30.2
Migut.G00481 Erythranthe guttata HOM05D013564 ORTHO05D011509 1.6e-32 144.8 406 30.3
Nitab4.5_0006111g0030 Nicotiana tabacum HOM05D010441 ORTHO05D011509 6.9e-31 139.4 458 24.2
PSO832G3709 Papaver somniferum HOM05D013564 ORTHO05D011509 1.2e-30 138.7 487 27.3
Nitab4.5_0002251g0010 Nicotiana tabacum HOM05D013564 ORTHO05D049380 2.9e-29 134.0 470 26.4
Migut.G00550 Erythranthe guttata HOM05D013564 ORTHO05D011509 8.4e-29 132.5 465 28.4
Nitab4.5_0001051g0040 Nicotiana tabacum HOM05D010441 ORTHO05D011509 1.4e-28 131.7 221 33.0
Oeu046461.1 Olea europaea HOM05D010441 ORTHO05D011509 1.2e-27 128.6 222 35.1
PSO133G0006 Papaver somniferum HOM05D010441 ORTHO05D011509 1.6e-27 128.3 488 25.8
Nitab4.5_0003267g0010 Nicotiana tabacum HOM05D013564 ORTHO05D049380 3.5e-27 127.1 471 26.1
Migut.G00554 Erythranthe guttata HOM05D013564 ORTHO05D011509 2.5e-25 120.9 414 28.3
Nn4g24472 Nelumbo nucifera HOM05D013564 ORTHO05D011509 1.1e-23 115.5 457 26.5
CDE12G0271 Ceratophyllum demersum HOM05D002556 ORTHO05D003153 1.8e-23 114.8 460 26.1
TAR216G0006 Trochodendron aralioides HOM05D010441 ORTHO05D011509 6.9e-23 112.8 321 28.3
CDE04G2755 Ceratophyllum demersum HOM05D010441 ORTHO05D011509 4.5e-22 110.2 394 26.9
PSO541G1329 Papaver somniferum HOM05D010441 ORTHO05D011509 9.3e-20 102.4 351 26.8
Lj1C88T9 Lonicera japonica HOM05D000056 ORTHO05D000019 2.0e-14 84.7 454 23.1
TAR628G1739 Trochodendron aralioides HOM05D010441 ORTHO05D011509 1.4e-12 78.6 176 31.8
CSS0025572 Camellia sinensis var. sinensis HOM05D000056 ORTHO05D000019 3.2e-12 77.4 454 22.2
Rhsim08G0187500 Rhododendron simsii HOM05D000056 ORTHO05D000019 3.2e-12 77.4 459 22.2
unitig_21.g20472 Utricularia gibba HOM05D000056 ORTHO05D000019 5.5e-12 76.6 472 25.4
Nn4g24362 Nelumbo nucifera HOM05D010441 ORTHO05D011509 2.7e-11 74.3 248 27.8
CiPaw.05G097300 Carya illinoinensis HOM05D000056 ORTHO05D000019 3.5e-11 73.9 478 22.6
Hma1.2p1_0738F.1_g211050 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 6.0e-11 73.2 461 23.2
PSO063G6556 Papaver somniferum HOM05D000056 ORTHO05D000019 6.0e-11 73.2 483 22.6
PGR004G0914 Punica granatum HOM05D000056 ORTHO05D000019 7.9e-11 72.8 478 22.6
A03p47710 Brassica napus HOM05D000056 ORTHO05D000019 1.3e-10 72.0 463 24.0
BraA03t13882Z Brassica rapa HOM05D000056 ORTHO05D000019 1.3e-10 72.0 463 24.0
Phvul.008G211000 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 1.3e-10 72.0 456 21.3
BcaC06g33285 Brassica carinata HOM05D000056 ORTHO05D000019 1.8e-10 71.6 465 24.3
Nn3g16183 Nelumbo nucifera HOM05D000056 ORTHO05D000019 3.0e-10 70.9 453 23.0
Prupe.1G210700 Prunus persica HOM05D000056 ORTHO05D000019 3.0e-10 70.9 426 23.9
BolC7t45087H Brassica oleracea HOM05D000056 ORTHO05D000019 3.9e-10 70.5 462 23.8
BcaC07g39479 Brassica carinata HOM05D000056 ORTHO05D000019 6.7e-10 69.7 448 23.4
A09p43230 Brassica napus HOM05D000056 ORTHO05D000019 8.7e-10 69.3 448 23.4
C08p25220 Brassica napus HOM05D000056 ORTHO05D000019 8.7e-10 69.3 448 23.4
BolC8t50144H Brassica oleracea HOM05D000056 ORTHO05D000019 8.7e-10 69.3 448 23.4
Rhsim12G0027200 Rhododendron simsii HOM05D000056 ORTHO05D000019 8.7e-10 69.3 477 21.0
AUR62038242 Chenopodium quinoa HOM05D000056 ORTHO05D000019 1.1e-09 68.9 463 22.9
vmacro09879 Vaccinium macrocarpon HOM05D000056 ORTHO05D000019 1.1e-09 68.9 460 21.5
Rhsim12G0117300 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.5e-09 68.6 470 20.0
Eucgr.I00809 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.9e-09 68.2 471 22.3
MBI07_g24941_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 1.9e-09 68.2 465 23.7
Actinidia33988 Actinidia chinensis HOM05D000056 ORTHO05D000019 2.5e-09 67.8 197 27.9
Ah.03g145860 Amaranthus hybridus HOM05D000056 ORTHO05D000019 2.5e-09 67.8 484 22.7
AUR62003927 Chenopodium quinoa HOM05D000056 ORTHO05D000019 2.5e-09 67.8 463 22.9
HPP92_021573 Vanilla planifolia HOM05D000056 ORTHO05D000019 3.3e-09 67.4 471 21.4
BraA09t39793Z Brassica rapa HOM05D000056 ORTHO05D000019 4.3e-09 67.0 452 22.3
ClCG01G017000 Citrullus lanatus HOM05D000069 ORTHO05D000019 4.3e-09 67.0 480 22.9
VMungo0647G2157 Vigna mungo HOM05D000056 ORTHO05D000019 4.3e-09 67.0 459 21.6
EL10Ac6g15701 Beta vulgaris HOM05D000056 ORTHO05D000019 5.7e-09 66.6 471 22.3
BcaB01g00638 Brassica carinata HOM05D000056 ORTHO05D000019 7.4e-09 66.2 448 22.8
CsaV3_6G043490 Cucumis sativus L. HOM05D000056 ORTHO05D000019 7.4e-09 66.2 479 22.8
FAN07G0778 Fragaria x ananassa HOM05D000056 ORTHO05D000019 7.4e-09 66.2 439 22.3
Ciclev10025336m.g Citrus clementina HOM05D000056 ORTHO05D000019 9.6e-09 65.9 453 22.1
ECA238G3820 Erigeron canadensis HOM05D000056 ORTHO05D000019 9.6e-09 65.9 480 22.9
Lsat_1_v5_gn_2_85661 Lactuca sativa HOM05D000056 ORTHO05D000019 9.6e-09 65.9 474 22.4
AT3G50120 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 1.3e-08 65.5 468 24.6
BcaC06g33104 Brassica carinata HOM05D000056 ORTHO05D000019 1.3e-08 65.5 469 24.9
A03p47730 Brassica napus HOM05D000056 ORTHO05D000019 1.3e-08 65.5 467 24.6
BraA03t13884Z Brassica rapa HOM05D000056 ORTHO05D000019 1.3e-08 65.5 467 24.6
HanXRQChr02g0044311 Helianthus annuus HOM05D000056 ORTHO05D000019 1.3e-08 65.5 473 23.9
Sopen05g002640 Solanum pennellii HOM05D000056 ORTHO05D000019 1.3e-08 65.5 472 22.2
BcaC06g33288 Brassica carinata HOM05D000056 ORTHO05D000019 1.6e-08 65.1 469 24.9
BolC7t45090H Brassica oleracea HOM05D000056 ORTHO05D000019 1.6e-08 65.1 469 24.9
MELO3C007579.2 Cucumis melo HOM05D000056 ORTHO05D000019 1.6e-08 65.1 480 22.5
Sed0007338 Sechium edule HOM05D000056 ORTHO05D000019 1.6e-08 65.1 481 23.7
Carub.0005s1646 Capsella rubella HOM05D000056 ORTHO05D000019 2.1e-08 64.7 463 24.4
CiPaw.01G013900 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.1e-08 64.7 475 22.5
Eucgr.J01419 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.1e-08 64.7 451 22.0
Sc04g0003540 Simmondsia chinensis HOM05D000056 ORTHO05D000019 2.1e-08 64.7 456 23.0
A03p47740 Brassica napus HOM05D000056 ORTHO05D000019 2.8e-08 64.3 193 29.0
C07p45680 Brassica napus HOM05D000056 ORTHO05D000019 2.8e-08 64.3 193 29.0
Thhalv10010280m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 3.7e-08 63.9 457 24.1
Sp5g12000 Schrenkiella parvula HOM05D000056 ORTHO05D000019 3.7e-08 63.9 462 22.5
Nn2g14914 Nelumbo nucifera HOM05D000056 ORTHO05D000019 4.8e-08 63.5 180 27.2
THA.LOC104827372 Tarenaya hassleriana HOM05D000056 ORTHO05D000019 4.8e-08 63.5 485 23.7
Actinidia16464 Actinidia chinensis HOM05D000056 ORTHO05D000019 8.2e-08 62.8 480 24.6
Aqoxy6G02910 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 8.2e-08 62.8 475 22.7
Cc07_g06370 Coffea canephora HOM05D000056 ORTHO05D000019 8.2e-08 62.8 482 22.4
Gohir.A09G003400 Gossypium hirsutum HOM05D000056 ORTHO05D000019 8.2e-08 62.8 187 28.3
Sc07g0000680 Simmondsia chinensis HOM05D000056 ORTHO05D000019 8.2e-08 62.8 192 30.7
Sopen02g037590 Solanum pennellii HOM05D000056 ORTHO05D000019 8.2e-08 62.8 449 22.7
Eucgr.I00808 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.1e-07 62.4 441 22.0
Hma1.2p1_2648F.1_g326110 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 1.1e-07 62.4 477 22.9
ATR0796G329 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.4e-07 62.0 185 29.7
Nn5g30388 Nelumbo nucifera HOM05D000056 ORTHO05D000019 1.4e-07 62.0 452 24.8
Solyc02g093020.3 Solanum lycopersicum HOM05D000056 ORTHO05D000019 1.4e-07 62.0 449 22.5
AL5G30240 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 1.8e-07 61.6 449 24.1
AL5G30270 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 1.8e-07 61.6 191 28.8
AT3G50170 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 1.8e-07 61.6 446 22.6
Eucgr.G00791 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.8e-07 61.6 486 21.0
Nn3g18361 Nelumbo nucifera HOM05D010441 ORTHO05D011509 1.8e-07 61.6 169 26.6
PSO675G1093 Papaver somniferum HOM05D000056 ORTHO05D000019 1.8e-07 61.6 485 21.0
BraA02t08095Z Brassica rapa HOM05D000056 ORTHO05D000019 2.4e-07 61.2 444 23.4
Sabra16G0041800 Salix brachista HOM05D000056 ORTHO05D000019 2.4e-07 61.2 171 30.4
Sp5g11980 Schrenkiella parvula HOM05D000056 ORTHO05D000019 2.4e-07 61.2 465 23.4
ATR1152G008 Amborella trichopoda HOM05D000056 ORTHO05D000019 3.1e-07 60.8 191 29.3
COL.COLO4_20323 Corchorus olitorius HOM05D000056 ORTHO05D000019 3.1e-07 60.8 197 27.9
Gohir.D09G003120 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.1e-07 60.8 187 27.8
Gorai.006G003900 Gossypium raimondii HOM05D000056 ORTHO05D000019 3.1e-07 60.8 187 27.8
MD02G1177800 Malus domestica HOM05D000056 ORTHO05D000019 3.1e-07 60.8 475 21.3
Oeu014790.1 Olea europaea HOM05D000056 ORTHO05D000019 3.1e-07 60.8 475 22.9
Aa31LG4G18490 Aethionema arabicum HOM05D000056 ORTHO05D000019 4.1e-07 60.5 447 24.2
HanXRQChr08g0224751 Helianthus annuus HOM05D000056 ORTHO05D000019 4.1e-07 60.5 184 28.8
RcHm_v2.0_Chr2g0106461 Rosa chinensis HOM05D000056 ORTHO05D000019 4.1e-07 60.5 450 22.9
RcHm_v2.0_Chr3g0479631 Rosa chinensis HOM05D000056 ORTHO05D000019 4.1e-07 60.5 355 24.2
Solyc04g019310.3 Solanum lycopersicum HOM05D000056 ORTHO05D000019 4.1e-07 60.5 187 27.3
Solyc04g019313.1 Solanum lycopersicum HOM05D000056 ORTHO05D000019 4.1e-07 60.5 187 27.3
vmacro17971 Vaccinium macrocarpon HOM05D000056 ORTHO05D000019 4.1e-07 60.5 476 24.2
Carub.0005s1650 Capsella rubella HOM05D000056 ORTHO05D000019 6.9e-07 59.7 191 28.8
Nn1g04741 Nelumbo nucifera HOM05D000056 ORTHO05D000019 6.9e-07 59.7 461 24.9
Rhsim12G0118100 Rhododendron simsii HOM05D000056 ORTHO05D000019 6.9e-07 59.7 468 19.9
Solyc05g006690.3 Solanum lycopersicum HOM05D000056 ORTHO05D000019 6.9e-07 59.7 196 27.6
PGSC0003DMG400035938 Solanum tuberosum HOM05D000056 ORTHO05D000019 6.9e-07 59.7 452 22.6
BcaC06g33106 Brassica carinata HOM05D000056 ORTHO05D000019 9.0e-07 59.3 440 23.9
Manes.09G172601 Manihot esculenta HOM05D000056 ORTHO05D000019 9.0e-07 59.3 206 27.7
Nn7g38064 Nelumbo nucifera HOM05D000056 ORTHO05D000019 9.0e-07 59.3 176 31.2
ATR0582G366 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.2e-06 58.9 470 23.0
Glyma.01G189300 Glycine max HOM05D000056 ORTHO05D000019 1.2e-06 58.9 445 23.4
Nitab4.5_0003134g0020 Nicotiana tabacum HOM05D000056 ORTHO05D000019 1.2e-06 58.9 187 26.7
Carub.0005s1649 Capsella rubella HOM05D000056 ORTHO05D000019 1.5e-06 58.5 191 28.8
CiPaw.05G097200 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.5e-06 58.5 189 27.5
ECA233G4851 Erigeron canadensis HOM05D000056 ORTHO05D000019 1.5e-06 58.5 184 27.2
Gohir.A11G196500 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.5e-06 58.5 476 23.1
Nitab4.5_0000408g0010 Nicotiana tabacum HOM05D000056 ORTHO05D000019 1.5e-06 58.5 194 25.8
AT3G50160 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 2.0e-06 58.2 192 27.6
Lj2g0027411 Lotus japonicus HOM05D000056 ORTHO05D000019 2.0e-06 58.2 452 23.0
Nitab4.5_0014725g0020 Nicotiana tabacum HOM05D000056 ORTHO05D000019 2.0e-06 58.2 194 25.8
Peaxi162Scf00209g00099 Petunia axillaris HOM05D000056 ORTHO05D000019 2.0e-06 58.2 195 27.7
SalBow2G2264 Salvia bowleyana HOM05D000056 ORTHO05D000019 2.0e-06 58.2 193 26.9
PGSC0003DMG400010633 Solanum tuberosum HOM05D000056 ORTHO05D000019 2.0e-06 58.2 187 25.7
A02p30810 Brassica napus HOM05D000056 ORTHO05D000019 2.6e-06 57.8 432 23.1
Eucgr.J01706 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.6e-06 57.8 187 28.3
Thhalv10011143m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 2.6e-06 57.8 428 23.6
FvH4_1g04610 Fragaria vesca HOM05D000056 ORTHO05D000019 2.6e-06 57.8 370 23.2
PGR119G1826 Punica granatum HOM05D000056 ORTHO05D000019 2.6e-06 57.8 191 27.7
Sp5g11960 Schrenkiella parvula HOM05D000056 ORTHO05D000019 2.6e-06 57.8 189 29.6
Sp5g11990 Schrenkiella parvula HOM05D000056 ORTHO05D000019 2.6e-06 57.8 451 24.8
PGSC0003DMG400010632 Solanum tuberosum HOM05D000056 ORTHO05D000019 2.6e-06 57.8 188 27.1
TWI18G0590 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 2.6e-06 57.8 192 26.0
Aa31LG4G18480 Aethionema arabicum HOM05D000056 ORTHO05D000019 3.4e-06 57.4 191 28.8
Nitab4.5_0011518g0010 Nicotiana tabacum HOM05D000056 ORTHO05D000019 3.4e-06 57.4 187 25.7
Oeu033764.1 Olea europaea HOM05D000056 ORTHO05D000019 3.4e-06 57.4 445 19.8
PSO675G5807 Papaver somniferum HOM05D000056 ORTHO05D000019 3.4e-06 57.4 194 26.8
Potri.001G071300 Populus trichocarpa HOM05D000056 ORTHO05D000019 3.4e-06 57.4 198 27.8
RcHm_v2.0_Chr3g0479741 Rosa chinensis HOM05D000056 ORTHO05D000019 3.4e-06 57.4 355 23.9
C03p44420 Brassica napus HOM05D000056 ORTHO05D000019 4.5e-06 57.0 188 26.1
CANSAT25G2857 Cannabis sativa HOM05D000056 ORTHO05D000019 4.5e-06 57.0 191 27.7
CANSAT25G3012 Cannabis sativa HOM05D000056 ORTHO05D000019 4.5e-06 57.0 191 27.7
HanXRQChr10g0315101 Helianthus annuus HOM05D000991 ORTHO05D000848 4.5e-06 57.0 92 34.8
Lsat_1_v5_gn_8_32861 Lactuca sativa HOM05D000056 ORTHO05D000019 4.5e-06 57.0 186 30.1
Nitab4.5_0000258g0140 Nicotiana tabacum HOM05D000056 ORTHO05D000019 4.5e-06 57.0 95 34.7
PGSC0003DMG400022626 Solanum tuberosum HOM05D000056 ORTHO05D000019 4.5e-06 57.0 195 27.7
BcaC06g33107 Brassica carinata HOM05D000056 ORTHO05D000019 5.9e-06 56.6 191 28.3
Dinv15846 Davidia involucrata HOM05D000056 ORTHO05D000019 5.9e-06 56.6 152 28.3
Thhalv10010906m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 5.9e-06 56.6 469 22.8
Lj7C75T2 Lonicera japonica HOM05D000056 ORTHO05D000019 5.9e-06 56.6 464 23.1
Potri.016G039700 Populus trichocarpa HOM05D000056 ORTHO05D000019 5.9e-06 56.6 169 29.6
Potri.016G039733 Populus trichocarpa HOM05D000056 ORTHO05D000019 5.9e-06 56.6 169 29.6
AT3G50130 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 7.6e-06 56.2 424 23.3
FAN14G4176 Fragaria x ananassa HOM05D000056 ORTHO05D000019 7.6e-06 56.2 370 23.2
QL10p011524 Quercus lobata HOM05D000056 ORTHO05D000019 7.6e-06 56.2 446 23.5
BcaB01g00634 Brassica carinata HOM05D000056 ORTHO05D000019 1.0e-05 55.8 191 27.7
Prupe.6G230300 Prunus persica HOM05D000056 ORTHO05D000019 1.0e-05 55.8 475 21.1
Rhsim08G0098100 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.0e-05 55.8 466 22.5
Sabra16G0045500 Salix brachista HOM05D000056 ORTHO05D000019 1.0e-05 55.8 481 22.0
Thecc.01G234400 Theobroma cacao HOM05D000056 ORTHO05D000019 1.0e-05 55.8 197 26.9
TPR.G26884 Trifolium pratense HOM05D000056 ORTHO05D000019 1.0e-05 55.8 459 24.4
TAR622G0654 Trochodendron aralioides HOM05D000056 ORTHO05D000019 1.0e-05 55.8 463 21.2


User provided reference genes

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