Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 2.5e-217 758.4 369 100.0
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 6.5e-210 733.8 369 96.2
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.2e-200 703.0 375 91.5
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 6.4e-149 531.2 385 70.6
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.3e-146 522.7 391 69.1
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.6e-144 516.5 383 69.2
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 9.4e-124 447.6 361 64.5
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.7e-96 357.1 351 52.7
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.5e-92 342.0 450 44.7
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 2.5e-84 316.6 384 45.8
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 2.2e-80 303.5 408 44.1
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 2.8e-80 303.1 373 44.8
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.8e-80 303.1 377 44.8
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 3.9e-77 292.7 377 43.0
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 5.6e-76 288.9 376 44.1
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.1e-75 287.0 385 42.6
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 2.3e-74 283.5 328 47.9
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 5.2e-74 282.3 369 43.4
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 9.8e-73 278.1 415 39.3
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 8.3e-72 275.0 394 41.9
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.9e-71 273.9 369 39.6
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 2.4e-71 273.5 381 40.2
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.2e-70 271.2 369 40.7
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 2.0e-70 270.4 371 40.2
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 3.5e-70 269.6 377 42.4
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 6.0e-70 268.9 362 43.6
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-69 267.3 369 41.2
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 3.9e-69 266.2 380 40.0
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 7.3e-68 261.9 359 41.5
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 2.1e-67 260.4 368 39.1
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 6.2e-67 258.8 422 36.7
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 6.2e-67 258.8 446 36.1
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 8.0e-67 258.5 378 39.7
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 8.0e-67 258.5 386 40.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.1e-66 258.1 368 40.8
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.1e-66 258.1 363 38.3
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.8e-66 257.3 378 39.7
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.3e-66 256.9 368 41.6
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 6.8e-66 255.4 377 37.7
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.9e-66 255.0 367 40.1
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 8.9e-66 255.0 369 41.5
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.2e-65 254.6 384 38.0
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.5e-65 254.2 368 37.8
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.5e-65 254.2 377 41.4
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.6e-65 253.4 356 41.3
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 2.6e-65 253.4 363 38.0
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 4.4e-65 252.7 367 39.8
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 4.4e-65 252.7 372 40.3
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.9e-64 250.0 370 40.3
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 6.4e-64 248.8 388 37.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.9e-63 247.3 376 39.1
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 3.2e-63 246.5 361 39.6
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 9.2e-63 245.0 377 38.7
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 2.1e-62 243.8 369 37.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.3e-61 241.1 207 55.6
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.7e-61 240.7 364 37.9
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 3.0e-61 240.0 386 38.1
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.5e-60 237.7 298 47.0
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.5e-60 236.9 388 37.6
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 2.5e-60 236.9 373 37.5
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 3.3e-60 236.5 367 37.9
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 5.6e-60 235.7 179 60.3
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 9.5e-60 235.0 365 38.1
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.1e-59 233.8 365 39.2
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.1e-59 233.8 195 55.4
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.1e-58 231.5 182 58.2
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 6.8e-58 228.8 360 38.1
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.2e-57 228.0 389 35.2
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 5.8e-57 225.7 412 32.8
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.1e-55 221.5 351 36.5
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.4e-55 221.1 172 57.6
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 3.2e-55 219.9 359 36.2
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 7.1e-55 218.8 370 35.9
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 3.5e-54 216.5 227 49.3
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.3e-53 214.5 441 33.6
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.3e-53 214.5 318 39.6
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 9.6e-52 208.4 345 36.2
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.8e-51 206.8 174 51.7
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 4.7e-51 206.1 410 32.0
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-50 204.9 444 32.9
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-50 204.1 379 35.1
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 5.8e-49 199.1 468 30.6
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-48 198.0 324 36.7
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.2e-48 197.2 244 42.2
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 3.8e-48 196.4 458 30.8
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.1e-47 194.9 361 33.2
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 5.4e-47 192.6 317 35.0
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.1e-47 192.2 303 38.6
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.0e-45 188.3 357 33.6
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-44 184.9 361 34.1
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.3e-43 181.4 339 33.9
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 1.6e-43 181.0 360 31.9
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 4.8e-43 179.5 185 45.4
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 6.2e-43 179.1 251 37.1
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-42 178.3 264 38.3
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 1.4e-42 177.9 187 46.5
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 5.3e-42 176.0 191 48.7
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 6.9e-42 175.6 367 32.4
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 9.0e-42 175.3 369 33.9
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 2.6e-41 173.7 359 31.2
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 2.6e-41 173.7 205 42.9
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.4e-41 172.9 191 46.6
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 9.9e-41 171.8 175 46.3
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 6.4e-40 169.1 218 43.1
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.1e-39 168.3 190 44.7
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-39 167.5 194 42.8
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.9e-39 167.5 364 31.9
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 4.2e-39 166.4 401 31.7
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.4e-39 166.0 366 29.5
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.1e-38 164.1 292 34.6
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 2.1e-38 164.1 363 33.3
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 4.6e-38 162.9 201 39.8
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.0e-37 161.8 198 39.9
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.0e-37 161.8 350 33.1
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.3e-35 154.8 152 48.0
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 2.1e-35 154.1 178 43.8
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 2.1e-35 154.1 178 43.8
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.6e-35 153.3 178 44.9
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 4.8e-35 152.9 151 47.7
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 6.2e-35 152.5 189 44.4
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 6.2e-35 152.5 189 44.4
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 6.2e-35 152.5 162 45.1
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-34 151.0 363 28.7
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-34 151.0 191 43.5
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 5.3e-34 149.4 187 45.5
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 9.0e-34 148.7 175 42.3
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 9.0e-34 148.7 178 43.3
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 2.6e-33 147.1 192 43.8
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 2.6e-33 147.1 192 43.8
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 4.5e-33 146.4 347 31.4
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.2e-32 144.1 175 43.4
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 7.1e-31 139.0 97 60.8
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.5e-28 131.3 277 32.1
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 9.6e-28 128.6 199 33.7
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.6e-27 127.9 178 39.9
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.4e-26 124.8 115 47.0
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.8e-26 124.4 121 46.3
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.0e-25 120.9 190 35.8
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 2.6e-25 120.6 173 35.3
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 2.6e-25 120.6 173 35.3
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.4e-25 120.2 100 51.0
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 7.6e-25 119.0 159 35.2
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.0e-24 118.6 158 36.7
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.3e-24 118.2 143 42.0
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.3e-24 118.2 180 36.1
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.2e-23 113.6 290 27.9
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 4.2e-23 113.2 115 46.1
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 9.3e-23 112.1 113 45.1
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 9.3e-23 112.1 240 33.8
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.5e-20 104.8 317 27.1
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.5e-20 104.8 141 38.3
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 3.3e-20 103.6 158 33.5
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 5.3e-18 96.3 244 32.8
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 6.9e-18 95.9 239 31.8
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 3.4e-17 93.6 128 35.9
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.3e-16 91.7 172 30.8
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.3e-16 91.7 178 33.7
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.6e-11 74.7 192 31.8
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 1.8e-10 71.2 57 50.9
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 3.1e-10 70.5 82 45.1
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 3.1e-10 70.5 51 58.8
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 7.7e-09 65.9 70 37.1
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.3e-08 65.1 110 35.5
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 5.0e-08 63.2 37 70.3
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.1e-06 57.8 184 29.3
Sopen11g001500 Solanum pennellii HOM05D001580 ORTHO05D001517 2.7e-06 57.4 165 29.7
Solyc11g005525.1 Solanum lycopersicum HOM05D001580 ORTHO05D001517 4.6e-06 56.6 173 27.2
CAN.G1156.6 Capsicum annuum HOM05D001580 ORTHO05D001517 6.1e-06 56.2 169 27.8


User provided reference genes

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