Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.3e-76 290.0 192 100.0
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 3.2e-75 285.4 192 85.9
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.1e-70 270.4 189 91.5
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.3e-60 236.9 179 84.4
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.3e-57 226.1 195 79.5
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 3.7e-55 218.8 193 76.2
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.6e-50 203.4 200 61.5
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 3.6e-50 202.2 197 62.9
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.4e-49 200.3 188 71.8
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 6.7e-49 198.0 189 71.4
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 6.7e-49 198.0 179 73.7
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.0e-48 196.4 192 57.3
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 3.3e-48 195.7 190 62.1
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 5.7e-48 194.9 198 66.2
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 9.7e-48 194.1 188 71.3
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.8e-47 192.6 193 66.3
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 3.7e-47 192.2 192 62.0
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 4.8e-47 191.8 194 61.3
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.4e-46 190.3 188 71.8
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.8e-46 189.9 190 63.2
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.1e-46 188.7 190 66.3
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 5.3e-46 188.3 192 66.7
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 7.0e-46 188.0 189 65.6
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 7.0e-46 188.0 190 60.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.2e-45 187.2 197 66.0
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.2e-45 187.2 199 63.3
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.5e-45 186.8 190 66.8
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.5e-45 186.8 157 84.1
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 2.0e-45 186.4 200 64.0
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.0e-45 186.4 190 66.3
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 2.6e-45 186.0 190 55.8
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 3.4e-45 185.7 187 67.9
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 3.4e-45 185.7 191 61.3
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 4.5e-45 185.3 200 71.5
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 5.9e-45 184.9 191 60.2
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 5.9e-45 184.9 192 62.0
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.0e-44 184.1 194 68.0
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.3e-44 183.7 190 70.0
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.2e-44 183.0 190 56.8
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.9e-44 182.6 196 58.2
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 2.9e-44 182.6 190 61.1
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.9e-44 182.6 193 66.8
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.9e-44 182.6 190 66.8
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 3.8e-44 182.2 191 59.2
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.8e-44 182.2 190 66.8
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 5.0e-44 181.8 195 63.6
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 6.5e-44 181.4 188 61.2
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 8.5e-44 181.0 191 59.2
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 8.5e-44 181.0 187 61.0
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.1e-43 180.6 193 58.5
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.1e-43 180.6 190 56.3
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 1.1e-43 180.6 190 58.9
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.4e-43 180.3 191 59.7
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.9e-43 179.9 192 67.2
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.9e-43 179.9 201 65.2
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.9e-43 179.9 189 65.6
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 2.5e-43 179.5 194 67.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 7.2e-43 177.9 197 64.5
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 9.4e-43 177.6 191 58.1
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.6e-42 175.6 194 60.8
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 3.6e-42 175.6 190 57.4
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 4.7e-42 175.3 197 60.4
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 4.7e-42 175.3 190 65.8
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 8.0e-42 174.5 197 64.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.0e-42 174.5 190 55.8
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 8.0e-42 174.5 196 63.8
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 8.0e-42 174.5 188 60.6
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.0e-41 174.1 190 55.8
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-41 173.7 190 58.9
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.8e-41 173.3 193 56.5
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 2.3e-41 172.9 190 55.3
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 3.9e-41 172.2 197 62.9
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 5.2e-41 171.8 194 59.8
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 5.2e-41 171.8 194 59.8
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 5.2e-41 171.8 194 59.8
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 6.7e-41 171.4 198 63.1
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 8.8e-41 171.0 193 58.0
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-40 170.6 190 54.7
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.1e-40 170.6 190 61.1
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.5e-40 170.2 200 56.5
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.5e-40 170.2 199 58.8
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.0e-40 169.9 190 57.9
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.6e-40 169.5 190 66.8
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 7.4e-40 167.9 194 64.4
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.3e-39 167.2 190 71.1
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.1e-38 164.1 200 53.0
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-38 163.7 186 65.6
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 2.4e-38 162.9 187 58.8
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 2.4e-38 162.9 187 58.8
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 2.4e-38 162.9 197 59.9
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 2.4e-38 162.9 189 62.4
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 5.3e-38 161.8 196 62.8
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 9.1e-38 161.0 195 63.6
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 9.1e-38 161.0 193 55.4
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.6e-37 159.5 188 63.3
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 3.5e-37 159.1 190 62.6
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 7.7e-37 157.9 186 64.0
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 7.7e-37 157.9 186 64.0
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 5.0e-36 155.2 195 62.1
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 5.0e-36 155.2 195 62.6
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 6.5e-36 154.8 195 62.6
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 4.0e-33 145.6 195 47.7
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 9.7e-32 141.0 180 53.3
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 3.7e-31 139.0 180 45.6
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 6.3e-31 138.3 186 62.4
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.8e-30 136.7 186 50.0
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 3.1e-30 136.0 184 58.7
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 4.1e-30 135.6 132 65.2
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 5.3e-30 135.2 120 60.8
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-29 134.0 160 48.8
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.7e-28 130.2 151 57.6
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 1.1e-27 127.5 202 61.9
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 4.2e-27 125.6 177 46.9
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.5e-27 125.2 134 59.7
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 9.4e-27 124.4 160 45.6
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.6e-26 122.5 160 45.6
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 8.0e-26 121.3 115 55.7
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.0e-25 120.9 81 76.5
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 2.8e-23 112.8 117 53.8
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 6.3e-23 111.7 120 51.7
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 6.3e-23 111.7 151 53.0
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.4e-22 109.8 181 58.6
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-22 109.8 120 52.5
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-21 107.5 120 50.8
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 3.5e-21 105.9 120 50.0
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.6e-18 97.1 99 56.6
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.6e-18 97.1 104 73.1
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-14 84.0 109 46.8
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.8e-14 83.6 109 56.0
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.4e-14 83.2 126 63.5
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 4.1e-14 82.4 125 43.2
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 1.2e-10 70.9 83 50.6
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.4e-09 67.4 66 51.5
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 1.5e-08 63.9 181 44.2


User provided reference genes

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