Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 8.1e-241 836.6 417 100.0
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 8.9e-240 833.2 416 99.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.4e-231 804.3 422 96.2
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.2e-214 748.8 430 89.8
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.5e-204 714.9 429 86.0
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.9e-187 658.3 357 91.9
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 5.9e-175 617.8 397 80.6
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 4.0e-171 605.1 427 74.0
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 9.8e-170 600.5 422 72.5
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 5.4e-168 594.7 422 72.0
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.9e-167 591.3 431 72.4
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 5.0e-166 588.2 440 70.0
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 8.5e-166 587.4 422 71.8
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.5e-165 586.6 431 70.8
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 2.1e-164 582.8 435 69.0
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 6.1e-164 581.3 439 69.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 7.0e-160 567.8 389 73.8
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 2.0e-159 566.2 424 69.8
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.4e-154 548.9 435 67.1
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.7e-153 546.6 389 69.9
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.1e-152 543.9 414 67.6
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.6e-151 538.5 430 67.0
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.7e-150 536.6 424 66.7
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.6e-150 534.6 427 67.7
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 8.6e-150 534.3 405 66.7
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.5e-149 532.7 439 65.4
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.3e-149 531.9 398 68.3
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 5.6e-149 531.6 395 67.1
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 7.3e-149 531.2 387 69.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.2e-148 530.4 429 65.3
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.6e-148 530.0 383 68.1
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.1e-148 529.6 424 65.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.0e-147 527.3 402 65.9
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 6.8e-147 524.6 432 64.4
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 8.9e-147 524.2 421 65.6
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.5e-146 523.5 392 68.4
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 2.0e-146 523.1 395 67.1
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.4e-146 522.3 401 66.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 8.3e-145 517.7 385 66.2
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.9e-144 516.5 435 63.4
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 4.1e-144 515.4 380 66.3
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.7e-143 512.7 431 63.8
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.6e-143 511.9 422 66.4
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 4.6e-143 511.9 386 67.4
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.6e-143 511.9 428 63.6
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 6.0e-143 511.5 388 68.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.0e-143 511.5 388 68.0
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 7.8e-143 511.1 392 67.3
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.0e-142 509.2 388 67.8
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 3.9e-142 508.8 399 65.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.6e-142 508.1 388 67.3
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 5.6e-141 505.0 432 61.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 5.6e-141 505.0 397 65.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-140 503.4 387 67.2
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 6.2e-140 501.5 427 61.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.2e-140 501.5 399 64.4
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.2e-140 501.5 399 64.4
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 4.0e-139 498.8 426 62.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 5.2e-139 498.4 380 66.8
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 6.8e-139 498.0 423 62.9
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 6.8e-139 498.0 390 66.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.9e-139 497.7 399 64.2
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.0e-138 496.5 387 65.1
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.4e-138 495.7 381 66.4
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 3.4e-138 495.7 433 61.4
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.4e-138 495.7 382 67.0
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.4e-138 495.4 419 63.0
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 9.8e-138 494.2 396 64.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 6.4e-137 491.5 428 62.4
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.1e-136 490.7 419 63.5
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 2.4e-136 489.6 385 64.9
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.4e-136 489.6 393 64.4
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.6e-135 486.9 394 64.0
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 3.5e-135 485.7 429 60.6
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.5e-135 485.7 429 62.9
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 7.8e-135 484.6 411 61.6
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 7.8e-135 484.6 380 64.7
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.0e-134 484.2 380 65.0
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.3e-134 483.8 419 61.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 3.9e-134 482.3 390 64.6
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 5.1e-134 481.9 380 64.7
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 6.6e-134 481.5 380 64.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 6.6e-134 481.5 380 64.7
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 3.3e-133 479.2 430 60.9
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 7.3e-133 478.0 423 60.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 7.3e-133 478.0 405 63.0
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.6e-132 476.9 405 62.7
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.1e-132 476.5 385 63.4
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.1e-132 476.5 393 62.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.6e-132 475.7 427 61.4
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 4.7e-132 475.3 433 58.7
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 6.2e-132 474.9 383 64.0
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 8.1e-132 474.6 398 61.8
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.1e-131 474.2 374 64.7
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.8e-131 473.4 378 65.6
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 4.0e-131 472.2 426 61.5
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 5.2e-131 471.9 414 59.9
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.4e-130 469.2 427 59.3
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 7.6e-130 468.0 393 61.8
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.3e-129 467.2 426 59.9
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.9e-128 463.4 428 59.1
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.7e-126 456.8 396 60.4
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 9.6e-125 451.1 418 57.7
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.6e-124 449.1 393 60.1
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-123 447.2 389 60.7
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.4e-123 447.2 382 63.1
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.4e-122 442.2 423 57.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.4e-120 437.2 427 57.6
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-120 437.2 421 58.0
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.2e-120 435.6 423 55.1
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.3e-118 430.6 424 55.0
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.0e-118 429.5 424 55.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 8.7e-118 427.9 421 57.0
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.6e-114 416.4 322 65.2
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.3e-113 414.1 383 58.2
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.8e-113 412.5 376 58.0
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 3.9e-110 402.5 458 52.4
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 2.6e-106 389.8 382 57.3
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.8e-105 386.0 391 53.7
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 5.5e-104 382.1 382 56.0
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 2.7e-103 379.8 305 64.6
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.9e-97 359.0 338 58.3
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 8.7e-86 321.6 417 45.8
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 7.4e-77 292.0 221 66.5
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.3e-73 281.2 244 58.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 5.5e-72 275.8 247 58.7
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.7e-71 273.5 293 49.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 2.8e-68 263.5 400 39.5
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.4e-67 260.4 154 82.5
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.5e-64 251.1 229 59.8
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.5e-61 241.1 190 70.0
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.2e-58 231.5 205 62.4
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 7.2e-56 222.2 204 58.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 4.8e-52 209.5 162 67.3
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 6.3e-52 209.1 144 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.4e-45 186.8 311 36.3
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 6.3e-44 182.6 360 36.1
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 5.8e-29 132.9 111 64.9
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.6e-18 98.2 79 60.8
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.4e-14 84.3 66 60.6
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 6.4e-12 76.3 103 53.4
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 6.2e-07 59.7 333 22.2
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 4.0e-06 57.0 137 33.6
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 5.2e-06 56.6 36 61.1


User provided reference genes

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