Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.1e-135 485.7 252 100.0
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 4.9e-132 474.6 252 98.0
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 9.5e-128 460.3 252 96.0
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.3e-121 439.1 253 90.9
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.8e-97 359.8 252 77.4
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-96 356.3 252 76.6
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 2.1e-87 326.2 252 69.8
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 8.2e-87 324.3 252 67.9
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.0e-84 317.4 247 67.6
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.3e-84 317.0 252 65.9
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.7e-84 316.6 252 66.7
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 2.9e-84 315.8 254 64.6
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 8.4e-84 314.3 255 66.7
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.2e-82 310.5 253 68.0
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.2e-82 310.5 252 64.7
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.6e-82 308.5 252 63.9
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.9e-81 305.4 227 75.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 4.3e-80 302.0 256 63.7
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.4e-80 301.2 253 64.8
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 7.4e-80 301.2 254 62.6
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.6e-79 300.1 286 58.0
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.2e-79 299.7 254 64.2
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 3.7e-79 298.9 256 64.8
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 6.3e-79 298.1 255 63.9
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-78 296.6 243 63.8
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.1e-78 295.8 253 62.5
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 4.1e-78 295.4 234 69.7
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.0e-78 294.3 258 63.2
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 2.0e-77 293.1 239 64.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 2.6e-77 292.7 235 66.8
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.5e-77 292.0 258 63.2
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.9e-77 291.6 256 63.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.3e-76 290.4 250 60.8
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.7e-76 290.0 235 64.3
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.2e-76 289.7 256 63.3
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.9e-76 289.3 257 62.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.1e-75 287.3 259 62.5
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.4e-75 287.0 260 61.9
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.9e-75 286.6 250 62.0
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.9e-75 286.6 258 60.5
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.2e-75 285.8 256 62.5
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 3.2e-75 285.8 255 62.4
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 4.2e-75 285.4 250 61.2
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 5.5e-75 285.0 275 58.9
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.2e-74 283.9 227 66.1
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.6e-74 283.5 253 63.6
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.6e-74 282.3 288 58.7
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 6.1e-74 281.6 253 60.1
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.9e-74 281.2 260 61.9
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.0e-73 280.8 256 62.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.4e-73 280.4 254 60.2
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.4e-73 280.4 253 62.5
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.3e-73 279.6 246 63.0
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.3e-73 279.6 257 62.3
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.3e-73 279.6 256 62.5
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.1e-73 278.5 257 62.3
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.5e-72 276.9 242 62.8
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.5e-72 276.9 244 61.9
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.0e-72 276.6 258 62.4
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.5e-72 276.2 234 64.1
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.5e-72 276.2 234 64.5
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 5.7e-72 275.0 282 52.8
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 9.7e-72 274.2 255 59.2
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 9.7e-72 274.2 234 61.1
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 9.7e-72 274.2 260 60.0
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 9.7e-72 274.2 242 59.5
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.7e-71 273.5 230 62.2
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.2e-71 273.1 249 59.8
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.2e-71 273.1 255 61.2
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.2e-71 273.1 284 53.9
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 6.3e-71 271.6 227 63.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 8.2e-71 271.2 231 63.2
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.4e-70 270.4 255 57.6
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.1e-70 269.2 259 59.5
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.2e-69 267.3 245 59.2
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.2e-69 267.3 244 60.7
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.5e-69 266.9 254 56.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.0e-69 266.5 259 59.8
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 2.0e-69 266.5 242 57.4
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 3.4e-69 265.8 259 60.2
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.4e-69 265.8 244 61.1
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 5.9e-69 265.0 256 58.6
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 5.9e-69 265.0 256 60.2
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 2.9e-68 262.7 256 58.6
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 2.9e-68 262.7 256 58.6
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 3.8e-68 262.3 274 55.8
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 5.0e-68 261.9 255 58.8
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 5.0e-68 261.9 255 56.1
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 5.0e-68 261.9 250 56.8
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 8.5e-68 261.2 248 57.7
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.4e-67 260.4 234 61.1
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.9e-67 260.0 198 69.7
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 2.5e-67 259.6 229 59.8
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 2.5e-67 259.6 258 58.1
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 3.2e-67 259.2 244 57.8
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.2e-67 259.2 241 59.3
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 5.5e-67 258.5 227 60.8
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.2e-66 257.3 198 66.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.1e-66 256.5 255 57.3
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 2.1e-66 256.5 207 66.7
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.0e-65 254.2 243 56.4
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 2.3e-65 253.1 259 55.6
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 6.7e-65 251.5 246 58.5
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.0e-64 250.0 253 56.1
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.0e-64 250.0 253 56.1
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 3.3e-64 249.2 232 59.9
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 4.4e-64 248.8 253 56.1
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 7.4e-64 248.1 166 76.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 1.1e-62 244.2 254 55.9
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 4.1e-62 242.3 249 55.8
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 4.1e-62 242.3 254 55.9
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.0e-61 240.0 249 53.4
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.0e-61 240.0 249 53.4
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.5e-61 239.2 251 55.0
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.1e-59 234.2 169 69.8
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.1e-59 234.2 236 55.1
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 2.5e-59 233.0 246 54.1
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 6.1e-58 228.4 192 61.5
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.0e-57 227.6 255 52.5
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.8e-55 219.5 234 54.3
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 9.1e-54 214.5 204 56.9
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 5.0e-52 208.8 229 50.7
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.5e-51 206.5 237 50.6
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 4.7e-50 202.2 173 63.6
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.8e-49 200.3 256 47.7
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 4.8e-47 192.2 172 61.0
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.0e-45 186.8 157 61.8
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 8.5e-44 181.4 238 46.6
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.5e-43 179.9 249 47.8
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.6e-42 177.2 203 54.2
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 8.0e-42 174.9 167 57.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.2e-40 171.0 131 63.4
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 7.5e-40 168.3 123 67.5
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 6.6e-36 155.2 115 74.8
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 5.5e-35 152.1 239 39.7
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.8e-33 147.1 223 42.6
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.2e-31 140.2 215 45.1
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.0e-29 133.7 82 76.8
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.8e-26 123.2 128 51.6
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 4.7e-26 122.5 147 51.0
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.4e-25 120.9 127 51.2
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-25 120.9 128 50.8
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 4.0e-25 119.4 118 56.8
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 4.0e-25 119.4 118 56.8
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 4.0e-25 119.4 118 56.8
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 4.4e-24 115.9 169 47.3
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.0e-20 104.8 117 49.6
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.1e-14 84.7 102 54.9
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 7.1e-14 82.0 255 29.8
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.2e-13 81.3 200 33.5
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 7.8e-13 78.6 103 48.5
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.0e-12 78.2 101 45.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 5.1e-12 75.9 74 55.4
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.1e-09 66.6 57 63.2
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 3.7e-07 59.7 151 32.5
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 6.4e-07 58.9 156 30.8
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 8.3e-07 58.5 127 32.3
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.1e-06 58.2 151 28.5
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 1.4e-06 57.8 116 35.3
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 1.9e-06 57.4 36 72.2
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.4e-06 55.8 144 30.6
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.1e-06 55.5 130 31.5
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 9.2e-06 55.1 132 29.5


User provided reference genes

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