Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 2225.7 1116 100.0
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 2194.9 1116 98.8
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1910.6 1105 87.4
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1880.1 1113 85.4
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1778.8 1091 83.2
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1690.2 893 95.5
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1570.1 1127 69.9
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1522.7 1127 68.4
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1500.0 1140 67.2
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1497.6 1118 67.7
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1490.7 1128 68.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1481.5 1114 66.1
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1476.5 1115 67.0
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1464.9 1123 65.6
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1464.5 762 94.1
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1461.8 1125 65.9
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1460.7 1118 66.9
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1451.0 1118 66.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1445.3 1155 65.2
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1441.8 1123 65.9
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1430.6 1113 65.2
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1428.7 1118 65.4
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1418.7 1119 64.9
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1411.0 1181 61.3
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1406.7 1113 64.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1404.0 1118 64.4
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1402.9 1120 63.1
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1401.0 1113 65.4
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1389.4 1120 62.9
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1389.4 1127 63.4
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1383.6 1185 61.7
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1383.2 1113 63.4
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1382.5 1116 64.1
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1379.4 1120 62.9
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1379.0 1118 63.5
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1374.4 1110 62.6
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1374.4 1111 63.3
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1373.6 1150 62.1
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1369.4 1113 62.6
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1369.0 1114 62.3
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1367.4 1117 62.5
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1366.3 1128 61.5
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1363.6 1110 62.8
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1360.1 1120 62.0
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1354.0 1118 62.4
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1351.3 1126 62.3
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1349.7 1118 62.8
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1347.8 1107 62.1
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1347.8 1161 61.7
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1347.4 1117 61.1
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1345.9 1109 62.1
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1342.4 1116 62.8
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1342.4 1118 61.6
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1341.6 1116 61.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1122 62.0
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1340.1 1116 62.7
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1334.7 1168 58.8
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1333.9 1105 62.0
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1330.1 1133 60.4
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1329.7 1159 60.7
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1321.2 1197 58.5
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1317.4 1114 60.8
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1317.0 1114 60.1
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1315.1 1125 59.6
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1313.9 1113 60.1
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1313.5 1125 59.6
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1310.8 1113 59.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1113 59.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1306.6 1122 59.4
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1301.6 915 70.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1300.8 1071 63.7
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1113 59.7
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1125 59.6
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1284.6 1141 59.5
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1278.8 1091 60.7
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1277.7 1097 60.3
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1274.2 1123 59.9
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1274.2 1123 59.9
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1273.8 1096 60.6
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1272.7 1100 60.2
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1116 59.3
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1098 59.8
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1266.9 1203 57.1
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1266.9 1098 59.8
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1266.9 1097 59.2
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1265.0 1107 60.1
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1262.3 1111 59.9
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1256.5 957 65.9
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1098 59.5
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1109 58.9
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1247.6 1104 58.6
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1247.6 1111 58.6
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1247.6 1017 62.8
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1245.3 953 65.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1243.0 1014 63.8
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1111 58.6
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1238.8 1111 58.0
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1233.8 1100 58.7
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1218.4 1120 57.1
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1199.5 1122 56.0
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1188.7 1004 62.5
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1166.4 793 71.4
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1159.4 960 61.6
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1154.0 1124 53.9
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1136.7 837 67.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1115.5 956 61.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1088.6 1086 53.0
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 4.0e-303 1045.0 1143 50.1
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.6e-280 969.9 1015 50.9
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 8.7e-274 947.6 641 71.3
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 8.7e-274 947.6 1131 46.6
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.9e-268 929.9 1015 50.0
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 3.2e-268 929.1 799 59.3
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.8e-264 916.0 1146 45.2
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.4e-247 860.5 1095 45.4
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 7.5e-233 811.6 832 51.2
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 5.6e-196 689.1 984 41.7
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 5.4e-191 672.5 1108 39.4
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.3e-168 598.2 1129 36.8
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 6.0e-166 589.3 445 66.7
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.3e-155 555.1 457 58.9
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.7e-141 506.1 533 52.3
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.7e-115 421.8 335 60.0
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 6.1e-110 403.3 327 60.2
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 2.0e-105 388.3 1171 28.0
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.0e-93 349.4 524 41.6
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.3e-79 300.1 233 65.7
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.3e-72 279.3 383 43.9
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.5e-68 265.8 381 44.1
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.4e-66 258.5 231 58.9
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-63 249.6 261 52.9
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.3e-63 248.1 258 53.9
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.3e-55 221.1 210 56.2
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.8e-54 218.4 224 54.0
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 3.6e-54 218.0 209 56.0
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.6e-44 185.3 356 34.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.5e-43 180.6 175 52.0
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-42 179.5 175 52.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-42 179.5 175 52.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.4e-42 179.5 175 52.0
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-41 176.4 175 51.4
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.0e-40 171.8 243 42.4
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.0e-35 156.8 144 57.6
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 3.5e-33 148.3 412 29.9
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.0e-32 146.7 175 46.3
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.3e-32 145.6 254 38.6
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 3.9e-32 144.8 254 38.2
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 4.3e-31 141.4 254 38.6
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.7e-25 122.1 92 60.9
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.8e-21 109.4 103 58.3
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.2e-20 106.7 318 29.2
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 5.9e-20 104.4 131 44.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.0e-19 101.3 240 32.5
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.8e-16 92.8 58 65.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.0e-16 92.0 74 58.1
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.7e-15 87.0 79 51.9
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.0e-08 67.0 53 62.3


User provided reference genes

Program Settings