Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 2.1e-111 405.6 192 100.0
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.7e-108 396.0 192 98.4
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 8.4e-100 367.1 193 91.2
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.1e-83 313.5 199 77.4
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 6.0e-82 307.8 210 75.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.1e-78 295.4 212 72.6
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 5.3e-54 214.9 224 55.8
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.5e-53 213.4 199 54.3
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 4.5e-53 211.8 199 56.3
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 4.5e-53 211.8 208 56.7
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 4.5e-53 211.8 208 56.7
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.7e-52 209.9 199 58.8
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 2.5e-51 206.1 220 51.8
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.5e-51 206.1 197 54.8
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 7.2e-51 204.5 199 55.8
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.2e-50 203.8 193 57.0
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.1e-50 203.0 213 51.6
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.7e-50 201.8 206 53.9
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.0e-49 200.7 200 53.0
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.0e-49 200.7 222 49.5
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.8e-49 197.6 206 52.9
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.1e-48 197.2 208 53.4
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.0e-48 196.4 220 51.4
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 2.6e-48 196.1 215 50.7
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 7.4e-48 194.5 193 58.0
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.7e-47 193.4 198 54.5
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.2e-47 193.0 208 51.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 2.8e-47 192.6 193 56.0
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 4.8e-47 191.8 209 51.2
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.4e-46 190.3 198 55.1
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.4e-46 189.5 203 53.7
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 5.3e-46 188.3 207 53.1
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 2.0e-45 186.4 193 52.8
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 4.5e-45 185.3 206 50.5
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.0e-44 184.1 196 52.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.7e-44 183.3 192 53.1
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 6.5e-44 181.4 204 50.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.9e-43 179.9 202 50.0
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 4.2e-43 178.7 197 50.3
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.5e-43 178.3 214 48.1
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 3.6e-42 175.6 182 52.2
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.8e-41 171.0 193 52.8
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-40 170.6 154 57.1
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.6e-40 169.5 206 47.6
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.7e-39 166.8 200 49.0
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.7e-39 165.6 211 46.0
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 4.8e-39 165.2 194 47.9
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 2.4e-38 162.9 202 46.5
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 3.1e-38 162.5 191 47.6
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 7.0e-38 161.4 216 44.9
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.2e-37 160.6 208 45.2
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.2e-37 160.6 127 59.8
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.2e-37 160.6 168 56.0
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 2.0e-37 159.8 220 43.6
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.0e-37 159.8 115 66.1
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.7e-37 157.9 127 62.2
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 7.7e-37 157.9 193 47.2
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-36 157.1 213 46.0
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-36 157.1 127 61.4
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 2.2e-36 156.4 221 43.4
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.2e-36 156.4 127 61.4
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 5.0e-36 155.2 123 62.6
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 5.0e-36 155.2 140 57.1
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 6.5e-36 154.8 203 48.8
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 6.5e-36 154.8 125 61.6
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 8.5e-36 154.5 192 48.4
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.2e-35 152.5 224 42.4
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.2e-35 152.5 185 47.6
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.2e-35 152.1 127 59.8
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 4.2e-35 152.1 194 46.4
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 5.5e-35 151.8 151 55.0
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 9.4e-35 151.0 226 41.2
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 9.4e-35 151.0 193 45.6
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 1.2e-34 150.6 194 46.4
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.2e-34 150.6 128 56.2
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 2.1e-34 149.8 133 54.1
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.6e-34 149.1 202 44.6
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.0e-33 147.5 138 55.8
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.4e-33 147.1 214 44.4
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.8e-33 146.7 135 55.6
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.8e-33 146.7 138 55.1
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.0e-33 146.0 215 40.9
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.0e-33 146.0 214 43.9
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 4.0e-33 145.6 197 42.6
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.0e-33 145.6 138 54.3
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 5.2e-33 145.2 203 45.3
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 6.7e-33 144.8 126 57.1
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 6.7e-33 144.8 192 43.8
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.2e-32 144.1 122 61.5
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 2.6e-32 142.9 153 51.6
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 9.7e-32 141.0 193 44.6
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.7e-31 140.2 138 53.6
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 2.2e-31 139.8 195 46.2
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 4.8e-31 138.7 133 54.9
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 6.3e-31 138.3 126 57.9
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-30 136.7 207 39.6
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.1e-30 136.0 149 50.3
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 5.3e-30 135.2 189 42.3
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 5.3e-30 135.2 103 62.1
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 9.1e-30 134.4 197 41.6
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 9.1e-30 134.4 194 42.8
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 9.1e-30 134.4 135 51.1
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 2.7e-29 132.9 191 41.9
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 3.5e-29 132.5 126 56.3
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 4.5e-29 132.1 95 64.2
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 5.9e-29 131.7 152 49.3
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.3e-28 130.6 190 42.1
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.7e-28 130.2 198 42.9
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 6.5e-28 128.3 133 48.9
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 6.5e-28 128.3 211 38.9
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.5e-27 127.1 200 41.5
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.9e-27 126.7 133 51.9
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 5.5e-27 125.2 248 36.7
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 5.5e-27 125.2 248 36.7
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 9.4e-27 124.4 235 37.4
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 9.4e-27 124.4 217 37.3
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 9.4e-27 124.4 188 43.6
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 6.1e-26 121.7 206 39.3
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.8e-25 120.2 134 51.5
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.8e-25 120.2 149 46.3
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 5.2e-25 118.6 136 49.3
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 8.8e-25 117.9 201 38.8
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 2.8e-23 112.8 84 61.9
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 8.3e-23 111.3 84 58.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 8.3e-23 111.3 84 58.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 8.3e-23 111.3 84 58.3
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.8e-22 110.2 84 59.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.8e-22 110.2 84 59.5
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 5.4e-22 108.6 137 46.0
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.4e-22 108.6 138 43.5
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 3.5e-21 105.9 137 44.5
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 3.5e-21 105.9 137 45.3
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 3.5e-21 105.9 137 44.5
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 4.5e-21 105.5 137 44.5
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 4.5e-21 105.5 137 44.5
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 1.7e-20 103.6 129 45.0
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 5.0e-20 102.1 89 56.2
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 6.6e-20 101.7 142 44.4
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 6.6e-20 101.7 142 44.4
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 6.6e-20 101.7 165 41.2
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 8.6e-20 101.3 142 43.7
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 8.6e-20 101.3 142 43.7
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 2.5e-19 99.8 138 44.9
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 2.5e-19 99.8 138 44.9
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 4.2e-19 99.0 142 44.4
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 7.2e-19 98.2 137 43.1
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 4.7e-18 95.5 135 43.7
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 4.0e-17 92.4 196 36.2
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.0e-17 92.4 137 40.9
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 2.0e-16 90.1 135 42.2
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.6e-16 89.7 74 58.1
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.6e-16 89.7 196 37.2
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.3e-15 85.1 131 42.0
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 5.4e-14 82.0 187 31.0
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 7.0e-14 81.6 127 42.5
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 9.2e-14 81.3 86 44.2
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.0e-13 80.1 84 48.8
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.0e-12 77.8 86 48.8
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.5e-11 73.9 137 35.8
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.3e-11 72.8 132 38.6
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.2e-10 70.9 133 39.1
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 2.1e-10 70.1 194 35.1
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 6.1e-10 68.6 86 44.2
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 8.9e-09 64.7 210 31.0
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 1.2e-08 64.3 136 38.2
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.2e-08 64.3 53 60.4
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 1.5e-08 63.9 240 30.0
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 2.0e-08 63.5 221 28.5
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 9.8e-08 61.2 198 33.3
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 2.2e-07 60.1 194 32.0
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 2.9e-07 59.7 196 30.1
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 8.3e-07 58.2 50 58.0
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 1.4e-06 57.4 88 42.0


User provided reference genes

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