Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 4.8e-138 494.6 264 100.0
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 6.5e-135 484.2 264 98.1
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 3.0e-116 422.2 265 84.9
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 2.5e-115 419.1 265 86.0
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 2.9e-95 352.4 271 73.1
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.1e-81 305.4 276 65.2
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.6e-80 303.5 287 63.8
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.0e-79 300.8 248 67.3
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 1.9e-78 296.6 262 61.8
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.9e-78 296.6 261 59.8
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.4e-76 290.4 254 63.0
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 8.9e-76 287.7 264 60.6
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 2.0e-75 286.6 247 62.3
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 7.5e-75 284.6 273 59.7
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.4e-73 280.4 264 61.0
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.6e-72 276.9 269 59.5
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 9.5e-70 267.7 302 55.3
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 1.5e-67 260.4 222 65.8
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 3.4e-67 259.2 258 57.4
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.4e-67 259.2 261 56.3
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 1.3e-66 257.3 247 55.1
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 2.9e-66 256.1 250 60.8
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 3.7e-66 255.8 264 57.6
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 8.3e-66 254.6 247 59.5
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.4e-65 253.8 261 59.0
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 9.2e-65 251.1 253 58.5
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 1.6e-64 250.4 244 56.6
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 2.0e-64 250.0 249 57.4
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 3.5e-64 249.2 268 54.5
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 3.5e-64 249.2 244 55.3
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 1.0e-63 247.7 242 59.5
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.3e-63 247.3 235 61.3
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 5.0e-63 245.4 249 57.0
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 3.3e-62 242.7 256 57.0
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 4.3e-62 242.3 267 55.8
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 2.1e-61 240.0 251 57.0
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 2.1e-61 240.0 273 53.5
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 2.1e-61 240.0 253 55.7
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 3.6e-61 239.2 255 56.1
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 4.7e-61 238.8 251 55.0
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 6.2e-61 238.4 250 57.6
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 6.2e-61 238.4 254 56.7
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.1e-60 237.7 257 54.5
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 3.1e-60 236.1 266 50.8
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.5e-59 233.8 246 52.8
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 4.4e-59 232.3 278 52.5
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 9.8e-59 231.1 249 57.0
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 1.7e-58 230.3 253 54.5
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 1.7e-58 230.3 256 53.9
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.7e-58 230.3 304 49.0
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 1.7e-58 230.3 258 51.9
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 1.7e-58 230.3 251 55.8
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 6.4e-58 228.4 260 55.0
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 8.3e-58 228.0 255 54.5
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 8.3e-58 228.0 246 55.7
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 8.3e-58 228.0 249 54.6
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.1e-57 227.6 259 52.5
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.1e-57 227.6 247 55.9
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 2.4e-57 226.5 259 51.7
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.2e-57 226.1 246 55.7
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 4.1e-57 225.7 282 51.1
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.1e-57 225.7 261 50.6
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.6e-56 223.8 278 50.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.6e-56 223.8 279 50.2
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.7e-56 223.0 251 55.0
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 3.5e-56 222.6 274 49.6
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 3.5e-56 222.6 286 50.0
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 1.0e-55 221.1 264 54.5
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 1.7e-55 220.3 298 47.0
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.9e-55 219.2 278 51.1
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 6.6e-55 218.4 260 50.4
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 1.1e-54 217.6 255 53.7
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 3.3e-54 216.1 266 50.8
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.2e-53 214.2 256 50.4
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-53 213.8 274 51.5
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 6.2e-53 211.8 252 52.4
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.4e-52 210.7 253 53.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 1.7e-50 203.8 255 50.6
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 8.4e-50 201.4 223 53.8
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.4e-49 200.7 207 56.0
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.2e-49 199.5 249 45.4
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 2.7e-48 196.4 223 51.6
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 7.8e-48 194.9 204 54.9
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 7.8e-48 194.9 202 56.4
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 1.0e-47 194.5 261 45.6
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.7e-47 193.7 264 48.5
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 2.3e-47 193.4 203 55.7
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 3.0e-47 193.0 229 52.0
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 3.0e-47 193.0 260 49.2
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 5.1e-47 192.2 206 55.3
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 8.6e-47 191.4 225 52.4
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 3.3e-46 189.5 203 54.7
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 5.6e-46 188.7 259 47.9
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 7.3e-46 188.3 222 52.3
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 9.6e-46 188.0 233 50.6
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.6e-45 187.2 256 46.9
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.1e-45 186.8 208 54.3
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 2.8e-45 186.4 230 51.3
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.6e-45 186.0 246 45.1
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 8.1e-45 184.9 229 50.2
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 8.1e-45 184.9 216 52.8
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.1e-44 184.5 227 50.7
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.4e-44 184.1 200 54.5
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.8e-44 183.7 283 45.2
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 6.8e-44 181.8 232 50.0
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 6.8e-44 181.8 244 46.7
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 6.8e-44 181.8 268 42.9
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 9.9e-43 177.9 247 44.1
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.7e-42 177.2 102 79.4
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 1.7e-42 177.2 262 44.3
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 3.8e-42 176.0 233 49.8
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 9.3e-41 171.4 244 44.7
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 4.6e-40 169.1 121 67.8
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.3e-39 166.8 244 44.3
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 2.3e-39 166.8 248 44.4
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.9e-39 166.0 238 45.0
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 5.1e-39 165.6 133 61.7
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.1e-38 164.5 250 43.6
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.3e-38 162.9 240 43.3
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 2.1e-37 160.2 104 70.2
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 4.8e-37 159.1 250 42.8
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 6.2e-37 158.7 238 44.1
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.8e-36 157.1 238 43.7
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 2.4e-36 156.8 250 42.0
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.4e-36 156.8 101 70.3
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.2e-34 150.2 247 40.9
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.9e-33 147.1 247 42.5
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 5.4e-33 145.6 248 41.5
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 2.1e-32 143.7 247 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 9.6e-30 134.8 268 32.1
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.3e-29 134.4 271 36.2
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-27 127.9 226 38.9
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 4.5e-27 125.9 130 47.7
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 5.8e-27 125.6 258 35.7
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.7e-26 124.0 100 58.0
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.8e-26 122.9 231 35.9
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 4.2e-25 119.4 127 49.6
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 4.2e-25 119.4 127 49.6
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 2.3e-23 113.6 120 47.5
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 3.9e-23 112.8 295 31.2
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 5.1e-23 112.5 168 42.3
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 5.1e-23 112.5 86 59.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 6.7e-23 112.1 222 35.1
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-22 110.9 84 60.7
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-22 110.9 251 33.1
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.4e-20 104.4 112 50.0
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 2.4e-20 103.6 90 54.4
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 9.0e-20 101.7 86 55.8
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.0e-18 98.2 69 65.2
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 1.3e-18 97.8 178 38.8
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.9e-18 95.9 79 60.8
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.5e-11 72.8 121 36.4
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 4.5e-11 72.8 337 27.6
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 7.6e-11 72.0 78 56.4
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.6e-08 64.3 92 45.7
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.9e-06 57.4 39 71.8
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 9.7e-06 55.1 72 41.7


User provided reference genes

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