Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 5.2e-40 167.2 79 100.0
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 8.4e-30 133.3 63 98.4
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 8.4e-30 133.3 63 98.4
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 1.1e-29 132.9 63 96.8
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 1.9e-29 132.1 63 96.8
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.5e-28 127.9 63 93.7
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 4.6e-28 127.5 63 92.1
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 2.3e-27 125.2 68 83.8
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 2.3e-27 125.2 68 83.8
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 2.1e-25 118.6 71 74.6
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 1.8e-24 115.5 68 73.5
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 1.5e-23 112.5 63 77.8
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 2.6e-23 111.7 68 72.1
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 2.6e-23 111.7 68 70.6
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 3.4e-23 111.3 68 70.6
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 3.4e-23 111.3 68 70.6
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 7.6e-23 110.2 68 70.6
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 7.6e-23 110.2 63 76.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.3e-22 109.4 63 74.6
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 1.7e-22 109.0 68 69.1
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 1.7e-22 109.0 63 77.8
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 2.2e-22 108.6 68 69.1
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 2.2e-22 108.6 68 73.5
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 2.2e-22 108.6 68 69.1
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 2.9e-22 108.2 71 66.2
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 2.9e-22 108.2 68 69.1
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 3.8e-22 107.8 63 76.2
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 3.8e-22 107.8 62 74.2
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 4.9e-22 107.5 68 70.6
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 4.9e-22 107.5 68 70.6
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 6.4e-22 107.1 68 70.6
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 1.1e-21 106.3 62 72.6
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 1.9e-21 105.5 68 69.1
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.4e-21 105.1 62 74.2
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.4e-21 105.1 62 74.2
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 2.4e-21 105.1 62 74.2
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 3.2e-21 104.8 68 67.6
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 4.2e-21 104.4 68 67.6
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 4.2e-21 104.4 68 67.6
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 5.4e-21 104.0 68 66.2
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 7.1e-21 103.6 68 67.6
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 7.1e-21 103.6 68 67.6
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 7.1e-21 103.6 68 66.2
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 9.3e-21 103.2 62 72.6
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 1.2e-20 102.8 68 66.2
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 1.2e-20 102.8 68 64.7
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.2e-20 102.8 62 72.6
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 2.1e-20 102.1 68 64.7
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 2.1e-20 102.1 68 64.7
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 2.1e-20 102.1 68 66.2
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 3.5e-20 101.3 68 64.7
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 4.6e-20 100.9 68 64.7
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 4.6e-20 100.9 68 64.7
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 4.6e-20 100.9 63 69.8
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 6.0e-20 100.5 68 64.7
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 7.8e-20 100.1 68 64.7
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.0e-19 99.8 65 69.2
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 1.0e-19 99.8 63 66.7
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.0e-19 99.8 68 64.7
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 1.3e-19 99.4 65 69.2
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 1.3e-19 99.4 65 67.7
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.3e-19 99.4 63 66.7
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 1.7e-19 99.0 68 63.2
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.3e-19 98.6 62 71.0
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 2.3e-19 98.6 68 63.2
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 2.3e-19 98.6 68 64.7
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 2.3e-19 98.6 63 69.8
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 3.9e-19 97.8 67 65.7
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.9e-19 97.8 68 64.7
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.9e-19 97.8 71 63.4
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 5.1e-19 97.4 62 67.7
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 5.1e-19 97.4 69 63.8
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 5.1e-19 97.4 63 65.1
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 5.1e-19 97.4 68 63.2
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 6.6e-19 97.1 68 63.2
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 6.6e-19 97.1 68 63.2
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 6.6e-19 97.1 63 71.4
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 6.6e-19 97.1 62 66.1
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 8.7e-19 96.7 62 69.4
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 8.7e-19 96.7 68 61.8
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 8.7e-19 96.7 63 66.7
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.1e-18 96.3 68 61.8
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.1e-18 96.3 63 69.8
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.5e-18 95.9 62 67.7
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 1.5e-18 95.9 68 63.2
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 1.5e-18 95.9 62 66.1
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.9e-18 95.5 63 69.8
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.9e-18 95.5 63 69.8
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.9e-18 95.5 63 69.8
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.9e-18 95.5 63 63.5
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 2.5e-18 95.1 68 64.7
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.5e-18 95.1 63 69.8
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 2.5e-18 95.1 68 64.7
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 4.3e-18 94.4 62 66.1
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 5.6e-18 94.0 68 58.8
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 5.6e-18 94.0 68 64.7
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 5.6e-18 94.0 68 58.8
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 7.3e-18 93.6 62 64.5
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 9.6e-18 93.2 62 62.9
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 9.6e-18 93.2 62 67.7
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 9.6e-18 93.2 63 65.1
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.3e-17 92.8 62 67.7
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 1.6e-17 92.4 62 66.1
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 1.6e-17 92.4 68 60.3
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.6e-17 92.4 69 59.4
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 2.1e-17 92.0 62 64.5
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 4.8e-17 90.9 68 58.8
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 4.8e-17 90.9 81 53.1
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 6.2e-17 90.5 68 60.3
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 6.2e-17 90.5 68 60.3
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 6.2e-17 90.5 63 65.1
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 8.1e-17 90.1 62 64.5
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 8.1e-17 90.1 62 64.5
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 8.1e-17 90.1 68 63.2
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 1.1e-16 89.7 63 65.1
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 5.3e-16 87.4 62 62.9
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 6.9e-16 87.0 62 66.1
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 6.9e-16 87.0 63 61.9
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 9.0e-16 86.7 62 62.9
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 2.0e-15 85.5 62 59.7
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 2.2e-14 82.0 62 58.1
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 4.9e-14 80.9 68 57.4
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 9.3e-13 76.6 51 70.6
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 1.1e-10 69.7 42 69.0
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 4.3e-10 67.8 69 49.3
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 2.8e-09 65.1 44 63.6
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 5.3e-08 60.8 63 46.0
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 1.5e-07 59.3 47 57.4
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 5.8e-07 57.4 52 50.0


User provided reference genes

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