Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.6e-157 559.3 276 100.0
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.4e-148 529.6 276 94.6
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.2e-136 490.0 280 86.4
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 3.6e-136 488.4 240 98.3
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.5e-131 471.5 273 86.1
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 5.4e-108 394.8 242 76.0
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 7.0e-108 394.4 238 76.9
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 2.0e-107 392.9 242 75.2
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.1e-105 387.1 245 72.7
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.9e-105 386.3 274 70.4
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 5.6e-105 384.8 282 67.0
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.6e-104 383.3 279 68.1
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.1e-104 382.9 229 77.7
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 6.2e-104 381.3 244 73.0
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 6.2e-104 381.3 221 79.6
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 8.0e-104 380.9 266 69.5
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.1e-103 380.6 289 66.1
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 1.1e-103 380.6 262 69.8
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.8e-103 379.8 272 67.3
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 2.3e-103 379.4 280 65.4
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 2.3e-103 379.4 233 76.4
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 4.0e-103 378.6 281 67.3
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 5.2e-103 378.3 274 66.4
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 6.8e-103 377.9 283 66.8
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.5e-102 376.7 282 66.7
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.5e-102 376.7 274 67.2
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.5e-102 376.7 283 66.4
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 2.0e-102 376.3 275 66.2
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.0e-102 376.3 286 65.0
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.4e-102 375.2 235 74.0
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.4e-102 375.2 235 74.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 7.5e-102 374.4 221 79.2
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 7.5e-102 374.4 253 71.9
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 9.8e-102 374.0 284 65.8
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.7e-101 373.2 280 67.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 2.2e-101 372.9 276 67.4
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 6.4e-101 371.3 274 66.8
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.1e-100 370.5 297 62.3
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.9e-100 369.8 221 77.4
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.9e-100 369.8 276 67.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 4.1e-100 368.6 288 62.5
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 4.1e-100 368.6 221 77.8
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 9.2e-100 367.5 244 69.3
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.2e-99 367.1 274 66.1
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.2e-99 367.1 300 63.0
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 2.7e-99 365.9 250 70.0
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 3.5e-99 365.5 228 73.2
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 4.6e-99 365.2 290 63.8
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 6.0e-99 364.8 288 64.2
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 6.0e-99 364.8 274 63.9
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.7e-98 363.2 290 63.4
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.7e-98 363.2 275 66.2
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.0e-98 362.5 274 65.0
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 1.5e-97 360.1 284 65.1
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.5e-97 360.1 275 65.1
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 7.3e-97 357.8 229 71.6
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 9.5e-97 357.5 294 64.6
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.2e-96 357.1 232 71.6
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.8e-96 355.9 230 71.7
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 3.6e-96 355.5 243 69.1
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 8.1e-96 354.4 245 68.2
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.1e-95 354.0 233 69.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 3.1e-95 352.4 275 65.5
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 5.2e-95 351.7 237 69.6
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 8.9e-95 350.9 237 68.8
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.5e-94 350.1 279 64.5
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.5e-94 350.1 230 70.9
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.5e-94 350.1 183 89.6
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 2.0e-94 349.7 233 70.4
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 9.9e-94 347.4 290 60.3
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.3e-93 347.1 233 69.5
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.2e-93 346.3 290 60.7
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.9e-93 345.9 233 67.8
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 3.7e-93 345.5 289 61.2
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.7e-93 345.5 297 61.6
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 8.3e-93 344.4 229 69.0
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.9e-92 343.2 235 66.8
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 3.2e-92 342.4 259 64.1
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 4.1e-92 342.0 279 61.3
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 4.1e-92 342.0 289 60.6
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 5.4e-92 341.7 275 61.8
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.2e-91 340.5 270 63.7
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 2.1e-91 339.7 282 60.3
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.1e-91 339.7 284 62.7
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 2.7e-91 339.3 277 59.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.5e-91 339.0 221 69.2
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 2.3e-90 336.3 280 59.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 5.8e-86 321.6 302 54.3
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.1e-84 317.4 201 70.6
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.1e-84 317.4 253 60.1
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 4.1e-84 315.5 229 62.0
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.3e-82 310.5 276 58.7
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 3.0e-82 309.3 230 65.2
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 9.6e-81 304.3 230 63.0
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.2e-80 303.9 221 62.4
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.6e-80 303.5 276 57.6
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 6.2e-80 301.6 164 87.2
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 8.1e-80 301.2 238 62.2
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.4e-79 300.4 229 61.6
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.1e-79 299.3 219 65.8
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.5e-78 297.0 276 55.4
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.0e-78 296.6 183 76.5
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 3.4e-78 295.8 228 61.4
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.3e-77 293.9 253 57.7
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.3e-77 293.9 183 74.9
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.1e-76 290.8 221 62.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.4e-76 290.4 256 58.2
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 2.4e-76 289.7 270 57.0
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 4.2e-76 288.9 270 56.3
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 3.5e-75 285.8 255 56.9
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 5.1e-74 282.0 175 74.9
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 2.5e-73 279.6 179 71.5
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.9e-68 263.5 291 53.3
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 3.4e-62 242.7 227 55.5
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.3e-61 240.7 193 61.7
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.0e-53 214.5 265 44.2
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 5.3e-47 192.2 116 77.6
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.0e-46 190.3 267 42.7
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 7.7e-46 188.3 266 42.9
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.7e-45 187.2 309 36.2
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 3.8e-45 186.0 120 66.7
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.4e-42 177.6 156 54.5
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.6e-38 163.3 113 68.1
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 5.0e-37 159.1 119 62.2
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.0e-30 137.1 115 55.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.5e-28 130.2 77 76.6
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 3.6e-27 126.3 186 45.2
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.0e-26 124.8 72 76.4
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.9e-26 122.9 242 33.9
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.8e-23 114.0 77 66.2
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 2.4e-23 113.6 81 64.2
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.6e-14 84.3 78 55.1
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 5.0e-13 79.3 56 60.7
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 4.2e-12 76.3 85 44.7


User provided reference genes

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