Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 5.5e-114 414.5 231 100.0
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 9.4e-114 413.7 231 99.6
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 2.7e-113 412.1 231 99.1
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 6.9e-109 397.5 231 94.8
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 1.0e-104 383.6 231 91.8
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 2.0e-103 379.4 231 91.8
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 4.4e-103 378.3 224 92.4
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 2.4e-85 319.3 209 85.2
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 2.9e-83 312.4 212 71.7
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 1.1e-82 310.5 216 78.2
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 3.3e-82 308.9 222 80.2
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 5.5e-82 308.1 225 74.7
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 1.0e-80 303.9 225 74.7
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 1.4e-80 303.5 214 77.6
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 1.4e-80 303.5 215 78.1
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 1.8e-80 303.1 212 79.2
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 5.2e-80 301.6 216 74.1
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 1.5e-79 300.1 219 75.3
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 1.5e-79 300.1 209 80.9
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.0e-79 299.7 217 76.5
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 3.4e-79 298.9 224 70.5
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 3.4e-79 298.9 212 77.8
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 4.4e-79 298.5 217 70.5
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 4.4e-79 298.5 217 70.5
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 4.4e-79 298.5 212 76.9
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 9.8e-79 297.4 217 75.6
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 1.3e-78 297.0 216 75.9
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 1.3e-78 297.0 209 77.0
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.2e-78 296.2 212 77.4
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.2e-78 296.2 218 74.8
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.8e-78 295.8 212 77.4
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.8e-78 295.8 212 77.4
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 3.7e-78 295.4 214 74.3
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 3.7e-78 295.4 209 78.0
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 4.9e-78 295.0 217 75.1
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 6.3e-78 294.7 217 75.1
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 8.3e-78 294.3 218 75.7
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 1.1e-77 293.9 217 74.7
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 1.1e-77 293.9 212 76.9
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 1.4e-77 293.5 212 75.9
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 5.4e-77 291.6 209 74.6
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 9.2e-77 290.8 217 74.2
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.7e-76 289.3 217 74.2
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 3.5e-76 288.9 210 76.7
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 4.5e-76 288.5 218 65.1
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 7.8e-76 287.7 166 81.3
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 7.8e-76 287.7 216 74.1
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 1.0e-75 287.3 218 66.1
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 1.7e-75 286.6 218 64.7
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.3e-75 286.2 226 61.5
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 5.0e-75 285.0 209 74.2
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 5.0e-75 285.0 209 73.2
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 6.6e-75 284.6 216 63.0
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 6.6e-75 284.6 210 74.3
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 6.6e-75 284.6 221 73.8
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 8.6e-75 284.3 211 76.8
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 1.5e-74 283.5 171 78.4
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 1.9e-74 283.1 226 60.6
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 1.9e-74 283.1 218 63.3
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 2.5e-74 282.7 211 73.9
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 3.3e-74 282.3 204 66.7
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 3.3e-74 282.3 219 70.8
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 9.5e-74 280.8 223 61.0
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 1.2e-73 280.4 218 71.1
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 2.8e-73 279.3 218 61.9
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 2.8e-73 279.3 220 61.4
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 1.4e-72 276.9 216 72.2
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 1.8e-72 276.6 198 78.3
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 2.3e-72 276.2 216 71.8
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 5.2e-72 275.0 219 72.1
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 5.2e-72 275.0 216 70.8
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 5.2e-72 275.0 219 70.8
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 6.8e-72 274.6 209 69.9
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 8.9e-72 274.2 216 70.4
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 1.2e-71 273.9 209 62.2
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 1.2e-71 273.9 216 70.8
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 2.0e-71 273.1 216 70.4
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 2.6e-71 272.7 216 71.8
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 2.6e-71 272.7 211 72.0
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 2.6e-71 272.7 211 72.0
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 2.6e-71 272.7 216 71.3
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 3.4e-71 272.3 211 72.5
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 5.8e-71 271.6 216 71.3
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 5.8e-71 271.6 220 60.0
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 9.8e-71 270.8 210 71.9
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 2.2e-70 269.6 204 75.5
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 2.9e-70 269.2 194 76.3
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 8.3e-70 267.7 204 75.0
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 1.4e-69 266.9 204 73.0
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 2.4e-69 266.2 204 65.7
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 3.2e-69 265.8 209 72.7
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 5.4e-69 265.0 204 65.7
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 2.0e-68 263.1 216 68.5
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 3.5e-68 262.3 267 51.3
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 4.6e-68 261.9 209 70.8
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 6.0e-68 261.5 204 75.0
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.0e-67 260.8 209 71.3
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 3.9e-67 258.8 166 73.5
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 5.0e-67 258.5 204 74.5
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 1.5e-66 256.9 204 72.1
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 2.5e-66 256.1 216 57.9
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 4.3e-66 255.4 219 56.6
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 3.6e-65 252.3 204 73.0
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 8.9e-64 247.7 204 61.3
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.2e-60 237.3 195 63.6
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 1.2e-60 237.3 209 62.7
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 3.3e-58 229.2 224 67.9
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 5.6e-58 228.4 216 52.8
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 7.5e-55 218.0 212 54.2
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 1.7e-54 216.9 212 51.9
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 3.6e-49 199.1 167 59.3
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 6.2e-49 198.4 204 58.8
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 3.4e-47 192.6 176 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 2.1e-44 183.3 206 53.9
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 8.1e-41 171.4 147 72.1
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 6.9e-40 168.3 139 57.6
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 6.6e-35 151.8 202 50.0
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.8e-32 143.7 100 68.0
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 4.9e-22 109.0 97 78.4
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 4.5e-15 85.9 75 54.7
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 1.9e-10 70.5 45 68.9
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 4.3e-10 69.3 161 30.4
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-08 63.9 108 38.0
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-08 62.8 107 37.4
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 1.2e-07 61.2 111 37.8
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.2e-07 61.2 111 37.8
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 5.9e-07 58.9 157 31.2
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 5.0e-06 55.8 157 30.6
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 5.0e-06 55.8 156 34.6
RcHm_v2.0_Chr2g0103761 Rosa chinensis HOM05D000710 ORTHO05D000336 5.0e-06 55.8 163 30.1
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 6.5e-06 55.5 80 33.8
FvH4_2g32511 Fragaria vesca HOM05D002813 ORTHO05D003203 6.5e-06 55.5 134 30.6
FAN24G2117 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.5e-06 55.5 134 30.6
EL10Ac1g00777 Beta vulgaris HOM05D002629 ORTHO05D003221 8.5e-06 55.1 161 27.3


User provided reference genes

Program Settings