Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 7.9e-46 186.8 98 100.0
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.1e-44 183.0 97 97.9
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.6e-43 179.1 98 95.9
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 9.0e-42 173.3 98 90.8
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 2.6e-41 171.8 98 88.8
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 1.4e-37 159.5 98 82.7
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.1e-18 96.7 94 60.6
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.1e-18 96.7 94 60.6
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 3.1e-18 95.1 101 59.4
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.1e-18 94.7 98 59.2
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.0e-17 92.4 103 57.3
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.3e-16 89.7 93 61.3
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 5.0e-16 87.8 99 56.6
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 1.2e-14 83.2 96 53.1
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.2e-14 83.2 96 50.0
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 2.7e-14 82.0 93 53.8
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 3.6e-14 81.6 106 51.9
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 4.7e-14 81.3 103 54.4
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 4.7e-14 81.3 103 51.5
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 6.1e-14 80.9 90 55.6
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 8.0e-14 80.5 94 56.4
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.4e-13 79.7 98 54.1
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.8e-13 79.3 103 53.4
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 2.3e-13 79.0 87 54.0
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 3.0e-13 78.6 88 55.7
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 4.0e-13 78.2 92 53.3
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 5.2e-13 77.8 96 49.0
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 5.2e-13 77.8 104 51.0
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 6.8e-13 77.4 95 49.5
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 6.8e-13 77.4 103 50.5
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 8.8e-13 77.0 91 53.8
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 2.0e-12 75.9 82 56.1
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.0e-12 75.9 97 55.7
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 2.0e-12 75.9 104 51.0
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.6e-12 75.5 88 52.3
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.4e-12 75.1 97 47.4
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 4.4e-12 74.7 101 48.5
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 4.4e-12 74.7 100 48.0
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 4.4e-12 74.7 90 54.4
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 5.7e-12 74.3 94 50.0
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 5.7e-12 74.3 94 54.3
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 7.5e-12 73.9 89 53.9
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 9.8e-12 73.6 100 50.0
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.7e-11 72.8 93 52.7
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.7e-11 72.8 96 47.9
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 2.2e-11 72.4 88 53.4
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.8e-11 72.0 96 51.0
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 2.8e-11 72.0 91 50.5
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 6.3e-11 70.9 94 41.5
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 6.3e-11 70.9 92 50.0
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.3e-11 70.5 82 53.7
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 8.3e-11 70.5 93 49.5
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 1.1e-10 70.1 100 49.0
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.4e-10 69.7 84 52.4
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.4e-10 69.7 96 46.9
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.4e-10 69.7 88 53.4
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.4e-10 69.7 97 45.4
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.4e-10 69.7 93 50.5
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.8e-10 69.3 94 47.9
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 1.8e-10 69.3 91 49.5
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 2.4e-10 68.9 96 46.9
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.4e-10 68.9 97 50.5
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 3.1e-10 68.6 89 48.3
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 3.1e-10 68.6 89 49.4
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 3.1e-10 68.6 110 47.3
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 4.1e-10 68.2 88 52.3
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.1e-10 68.2 96 46.9
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.1e-10 68.2 88 53.4
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 4.1e-10 68.2 104 45.2
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 4.1e-10 68.2 92 45.7
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 5.4e-10 67.8 91 48.4
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 7.0e-10 67.4 86 50.0
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 9.1e-10 67.0 103 43.7
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 9.1e-10 67.0 100 46.0
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 9.1e-10 67.0 100 48.0
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 1.2e-09 66.6 92 44.6
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.2e-09 66.6 102 45.1
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 1.2e-09 66.6 87 48.3
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-09 66.6 96 45.8
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.6e-09 66.2 105 46.7
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.6e-09 66.2 78 48.7
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 2.0e-09 65.9 103 46.6
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 2.7e-09 65.5 93 46.2
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.7e-09 65.5 86 47.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.5e-09 65.1 96 47.9
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 3.5e-09 65.1 85 45.9
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 3.5e-09 65.1 54 59.3
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 4.5e-09 64.7 88 50.0
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.5e-09 64.7 96 47.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.5e-09 64.7 96 47.9
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 4.5e-09 64.7 93 48.4
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 4.5e-09 64.7 90 45.6
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 5.9e-09 64.3 87 50.6
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 5.9e-09 64.3 97 44.3
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 5.9e-09 64.3 100 47.0
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 7.7e-09 63.9 97 45.4
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 7.7e-09 63.9 61 55.7
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 7.7e-09 63.9 100 47.0
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.7e-09 63.9 86 51.2
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.7e-09 63.9 96 44.8
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 1.0e-08 63.5 95 47.4
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.0e-08 63.5 94 44.7
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.3e-08 63.2 90 44.4
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 1.3e-08 63.2 95 47.4
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.3e-08 63.2 99 45.5
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.3e-08 63.2 80 47.5
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 1.7e-08 62.8 52 59.6
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.2e-08 62.4 61 54.1
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 2.2e-08 62.4 82 50.0
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.2e-08 62.4 90 45.6
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 2.2e-08 62.4 87 50.6
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 2.2e-08 62.4 105 44.8
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 2.2e-08 62.4 93 48.4
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 2.9e-08 62.0 61 54.1
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 2.9e-08 62.0 85 45.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.9e-08 62.0 86 50.0
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 5.0e-08 61.2 85 44.7
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 6.5e-08 60.8 90 44.4
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 6.5e-08 60.8 61 54.1
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 8.5e-08 60.5 84 50.0
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 8.5e-08 60.5 62 53.2
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 8.5e-08 60.5 97 46.4
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 1.1e-07 60.1 52 57.7
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 1.1e-07 60.1 93 44.1
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-07 60.1 84 45.2
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.1e-07 60.1 87 44.8
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.5e-07 59.7 52 57.7
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.5e-07 59.7 52 57.7
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.5e-07 59.7 52 57.7
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.5e-07 59.7 101 45.5
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.5e-07 59.7 97 47.4
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.5e-07 59.7 86 48.8
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.9e-07 59.3 95 45.3
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 1.9e-07 59.3 94 44.7
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 1.9e-07 59.3 93 44.1
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 2.5e-07 58.9 85 49.4
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 2.5e-07 58.9 83 49.4
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 3.2e-07 58.5 97 46.4
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 4.2e-07 58.2 53 56.6
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 4.2e-07 58.2 53 56.6
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 4.2e-07 58.2 53 56.6
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 4.2e-07 58.2 53 56.6
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 9.4e-07 57.0 88 46.6
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 9.4e-07 57.0 88 46.6
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 9.4e-07 57.0 100 40.0
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 9.4e-07 57.0 87 47.1
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 9.4e-07 57.0 110 37.3
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 9.4e-07 57.0 103 41.7
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.2e-06 56.6 108 43.5
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.2e-06 56.6 86 41.9
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 1.2e-06 56.6 94 45.7
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 1.2e-06 56.6 87 41.4
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.2e-06 56.6 86 47.7
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.6e-06 56.2 86 46.5
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.6e-06 56.2 86 45.3
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.6e-06 56.2 86 45.3
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.6e-06 56.2 86 45.3
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 1.6e-06 56.2 97 46.4
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.1e-06 55.8 84 44.0
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.7e-06 55.5 109 42.2
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.7e-06 55.5 49 59.2
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.6e-06 55.1 101 45.5
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.6e-06 55.1 101 45.5
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 3.6e-06 55.1 97 45.4
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 3.6e-06 55.1 46 65.2
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 3.6e-06 55.1 88 43.2
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 4.7e-06 54.7 91 45.1
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 4.7e-06 54.7 86 46.5
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 4.7e-06 54.7 86 43.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 6.1e-06 54.3 83 42.2
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 8.0e-06 53.9 101 44.6
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 8.0e-06 53.9 98 41.8
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 8.0e-06 53.9 87 43.7


User provided reference genes

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