Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 4.0e-160 568.2 310 100.0
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.4e-149 533.1 310 95.2
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 4.9e-134 481.5 310 87.7
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 3.2e-101 372.5 321 72.6
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.3e-98 362.5 334 68.6
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.1e-96 354.4 333 67.6
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 7.0e-64 248.4 314 57.0
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.6e-47 194.1 328 43.3
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 2.7e-47 193.4 316 48.7
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 5.0e-46 189.1 312 45.5
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 8.9e-43 178.3 305 43.9
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 5.0e-38 162.5 339 40.7
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 6.6e-38 162.2 341 38.4
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.4e-35 154.5 318 39.3
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 2.3e-35 153.7 373 35.4
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 2.3e-35 153.7 317 42.3
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 3.4e-34 149.8 309 40.5
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.4e-34 149.4 320 38.8
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 7.5e-34 148.7 296 40.2
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 9.9e-34 148.3 311 41.5
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.3e-33 147.9 376 36.2
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 6.4e-33 145.6 381 38.6
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.9e-32 144.1 339 38.6
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.9e-32 144.1 302 42.7
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 4.1e-32 142.9 299 36.5
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.4e-32 142.5 322 38.8
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 9.2e-32 141.7 307 42.3
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.1e-31 140.6 322 38.5
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.7e-31 140.2 342 39.2
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.6e-31 139.4 345 35.1
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.6e-31 139.4 348 39.4
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.0e-30 138.3 331 39.0
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.3e-30 137.1 348 39.4
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.3e-30 137.1 342 38.0
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 2.5e-29 133.7 299 40.5
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-28 131.0 353 38.5
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 2.1e-28 130.6 355 33.2
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.1e-28 130.6 353 34.8
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.1e-27 128.3 351 34.8
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 1.8e-27 127.5 283 37.8
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 3.1e-27 126.7 347 34.3
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.0e-27 126.3 330 36.1
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 4.0e-27 126.3 328 38.7
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 4.0e-27 126.3 204 42.2
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 8.9e-27 125.2 351 36.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.2e-26 124.8 355 33.8
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 2.6e-26 123.6 376 33.5
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 3.4e-26 123.2 304 41.1
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.2e-25 120.6 336 38.4
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 6.4e-25 119.0 318 34.3
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 8.4e-25 118.6 345 33.6
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 4.1e-24 116.3 327 31.8
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 5.4e-24 115.9 194 42.8
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 9.2e-24 115.2 335 32.5
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.6e-23 114.4 322 36.3
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 4.6e-23 112.8 358 31.8
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 4.6e-23 112.8 321 35.2
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 7.8e-23 112.1 339 36.3
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.0e-22 111.7 324 35.8
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 1.0e-22 111.7 284 34.2
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.0e-22 111.7 281 35.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 2.3e-22 110.5 324 35.2
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 2.3e-22 110.5 381 34.6
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 3.9e-22 109.8 284 38.0
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-21 108.2 311 32.5
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-21 108.2 311 32.5
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-21 108.2 347 32.0
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 3.3e-21 106.7 320 33.4
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 2.1e-20 104.0 337 31.8
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 2.1e-20 104.0 315 36.5
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 3.6e-20 103.2 325 33.8
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 4.7e-20 102.8 280 35.4
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 6.2e-20 102.4 297 34.0
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 6.2e-20 102.4 376 31.4
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.2e-20 102.4 285 36.5
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 6.2e-20 102.4 306 34.3
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.1e-19 101.7 301 34.2
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 1.4e-19 101.3 320 31.9
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 1.8e-19 100.9 327 30.3
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.8e-19 100.9 241 35.3
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.4e-19 100.5 326 34.0
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 9.0e-19 98.6 307 34.2
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 9.0e-19 98.6 307 34.2
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 9.0e-19 98.6 307 34.2
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 9.0e-19 98.6 308 33.4
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 9.0e-19 98.6 313 34.8
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.2e-18 98.2 330 35.5
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.5e-18 97.8 241 34.9
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 4.4e-18 96.3 339 32.4
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.8e-18 95.9 240 33.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 9.9e-18 95.1 265 35.8
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.7e-17 94.4 331 32.3
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 4.9e-17 92.8 295 34.2
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 6.4e-17 92.4 363 29.5
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 6.4e-17 92.4 180 38.9
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 8.4e-17 92.0 330 31.8
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 8.4e-17 92.0 390 29.7
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.9e-16 90.9 363 30.0
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.9e-16 90.9 357 31.4
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.4e-16 90.5 366 30.1
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.2e-16 89.7 366 30.1
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 7.1e-16 89.0 307 33.2
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.2e-15 88.2 342 36.3
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 3.5e-15 86.7 357 29.4
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 3.5e-15 86.7 313 35.8
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 3.5e-15 86.7 366 29.8
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.6e-15 86.3 309 32.4
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 4.6e-15 86.3 353 29.7
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 1.0e-14 85.1 318 31.4
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 6.6e-14 82.4 372 30.1
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 1.1e-13 81.6 287 32.4
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 5.6e-13 79.3 280 29.6
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 5.6e-13 79.3 318 31.1
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 5.6e-13 79.3 311 30.2
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 7.3e-13 79.0 318 31.1
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 2.1e-12 77.4 236 32.6
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 2.8e-12 77.0 286 31.8
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 2.8e-12 77.0 187 36.4
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 8.1e-12 75.5 302 30.8
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 4.0e-11 73.2 332 30.1
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 5.3e-11 72.8 345 32.8
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 6.9e-11 72.4 243 32.9
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.5e-10 71.2 336 30.1
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 2.0e-10 70.9 243 32.1
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.0e-10 70.9 88 47.7
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 2.0e-10 70.9 381 28.1
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 4.5e-10 69.7 285 30.2
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 4.5e-10 69.7 285 30.2
Nitab4.5_0005127g0030 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.8e-09 66.6 128 44.5
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 4.9e-09 66.2 318 29.2
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 8.4e-09 65.5 286 26.2
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 1.1e-08 65.1 287 31.4
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 3.2e-08 63.5 341 27.6
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 3.2e-08 63.5 292 29.5
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 4.2e-08 63.2 300 29.7
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 5.4e-08 62.8 304 28.6
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 9.3e-08 62.0 325 26.5
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 2.7e-07 60.5 319 29.8
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.0e-06 58.5 318 27.4


User provided reference genes

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