Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 6.3e-42 173.7 89 100.0
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 3.8e-39 164.5 89 94.4
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 3.2e-38 161.4 89 92.1
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 4.8e-26 120.9 85 71.8
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 6.5e-23 110.5 91 65.9
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 6.5e-23 110.5 91 65.9
SalBow5G4637 Salvia bowleyana HOM05D005680 ORTHO05D006334 9.4e-22 106.7 89 65.2
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 8.0e-21 103.6 92 62.0
Nitab4.5_0007941g0020 Nicotiana tabacum HOM05D005680 ORTHO05D006334 1.0e-20 103.2 67 79.1
Nitab4.5_0003878g0080 Nicotiana tabacum HOM05D005680 ORTHO05D006334 1.4e-20 102.8 66 80.3
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 1.8e-20 102.4 94 62.8
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 1.2e-19 99.8 94 59.6
SalBow1G8512 Salvia bowleyana HOM05D005680 ORTHO05D006334 2.6e-19 98.6 77 67.5
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 3.4e-19 98.2 88 62.5
HanXRQChr12g0377211 Helianthus annuus HOM05D005680 ORTHO05D006334 1.7e-18 95.9 90 55.6
Nitab4.5_0000419g0130 Nicotiana tabacum HOM05D005680 ORTHO05D006334 1.7e-18 95.9 89 62.9
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 3.7e-18 94.7 79 62.0
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 4.8e-18 94.4 89 59.6
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 6.3e-18 94.0 65 70.8
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 1.1e-17 93.2 84 61.9
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 3.1e-17 91.7 84 61.9
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 5.4e-17 90.9 88 56.8
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 7.0e-17 90.5 72 65.3
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 7.0e-17 90.5 93 58.1
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 7.0e-17 90.5 93 60.2
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 1.6e-16 89.4 89 57.3
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 1.6e-16 89.4 67 68.7
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 2.0e-16 89.0 86 58.1
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 2.7e-16 88.6 85 56.5
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 2.7e-16 88.6 91 56.0
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 2.7e-16 88.6 94 52.1
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 3.5e-16 88.2 88 58.0
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 4.5e-16 87.8 72 66.7
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 4.5e-16 87.8 83 60.2
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 4.5e-16 87.8 85 56.5
DCAR_003112 Daucus carota HOM05D005680 ORTHO05D006334 5.9e-16 87.4 77 61.0
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 7.7e-16 87.0 90 55.6
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 1.7e-15 85.9 78 60.3
ECA246G0256 Erigeron canadensis HOM05D005680 ORTHO05D006334 2.9e-15 85.1 105 51.4
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 5.0e-15 84.3 72 61.1
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 6.6e-15 84.0 89 51.7
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 8.6e-15 83.6 95 52.6
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 1.1e-14 83.2 95 53.7
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 1.5e-14 82.8 81 59.3
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 1.9e-14 82.4 84 53.6
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 2.5e-14 82.0 88 52.3
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 3.3e-14 81.6 74 60.8
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 3.3e-14 81.6 95 51.6
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 4.2e-14 81.3 70 64.3
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 4.2e-14 81.3 87 49.4
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 4.2e-14 81.3 88 50.0
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 9.5e-14 80.1 93 50.5
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 1.6e-13 79.3 92 50.0
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 2.1e-13 79.0 73 57.5
Medtr8g081540 Medicago truncatula HOM05D005680 ORTHO05D006334 4.7e-13 77.8 85 55.3
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 4.0e-12 74.7 73 54.8
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 4.0e-12 74.7 69 53.6
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 4.0e-12 74.7 55 69.1
TPR.G11882 Trifolium pratense HOM05D005680 ORTHO05D006334 5.2e-12 74.3 86 50.0
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 8.9e-12 73.6 72 50.0
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 8.9e-12 73.6 72 50.0
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 2.0e-11 72.4 86 53.5
Gohir.A04G133600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 2.0e-11 72.4 48 68.8
Gohir.D04G176700 Gossypium hirsutum HOM05D005680 ORTHO05D006334 2.0e-11 72.4 48 68.8
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 2.0e-11 72.4 89 43.8
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 2.6e-11 72.0 91 47.3
Gorai.012G169600 Gossypium raimondii HOM05D005680 ORTHO05D006334 2.6e-11 72.0 48 66.7
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 2.6e-11 72.0 65 52.3
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 3.4e-11 71.6 86 52.3
Cpa.g.sc6.54 Carica papaya HOM05D005680 ORTHO05D006334 4.4e-11 71.2 69 52.2
COL.COLO4_09626 Corchorus olitorius HOM05D005680 ORTHO05D006334 4.4e-11 71.2 60 61.7
COL.COLO4_17729 Corchorus olitorius HOM05D005680 ORTHO05D006334 5.7e-11 70.9 81 48.1
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 5.7e-11 70.9 86 52.3
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 7.5e-11 70.5 70 51.4
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 9.8e-11 70.1 71 54.9
CsaV3_6G043830 Cucumis sativus L. HOM05D005680 ORTHO05D006334 1.3e-10 69.7 70 48.6
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 1.3e-10 69.7 86 51.2
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.7e-10 69.3 58 60.3
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.7e-10 69.3 63 58.7
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.7e-10 69.3 63 58.7
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 1.7e-10 69.3 71 54.9
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 2.2e-10 68.9 90 46.7
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 2.8e-10 68.6 64 54.7
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 2.8e-10 68.6 66 54.5
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 2.8e-10 68.6 68 57.4
ClCG11G018960 Citrullus lanatus HOM05D005680 ORTHO05D006334 2.8e-10 68.6 68 47.1
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 2.8e-10 68.6 64 56.2
SHI12592 Sapria himalayana HOM05D005680 ORTHO05D006334 2.8e-10 68.6 92 46.7
Thecc.02G019100 Theobroma cacao HOM05D005680 ORTHO05D006334 4.9e-10 67.8 74 47.3
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 6.3e-10 67.4 66 53.0
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 6.3e-10 67.4 66 53.0
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 6.3e-10 67.4 66 53.0
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 6.3e-10 67.4 66 53.0
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 6.3e-10 67.4 66 53.0
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 6.3e-10 67.4 59 59.3
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 6.3e-10 67.4 57 57.9
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 6.3e-10 67.4 63 58.7
Sed0000508 Sechium edule HOM05D005680 ORTHO05D006334 8.3e-10 67.0 87 44.8
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 1.1e-09 66.6 68 55.9
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.1e-09 66.6 86 50.0
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 1.4e-09 66.2 62 56.5
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 1.8e-09 65.9 68 48.5
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 2.4e-09 65.5 66 53.0
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 2.4e-09 65.5 66 53.0
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 2.4e-09 65.5 66 51.5
HPP92_012496 Vanilla planifolia HOM05D005680 ORTHO05D006334 2.4e-09 65.5 86 39.5
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 4.1e-09 64.7 66 50.0
QL02p015306 Quercus lobata HOM05D005680 ORTHO05D006334 4.1e-09 64.7 68 51.5
CsaV3_4G037560 Cucumis sativus L. HOM05D005680 ORTHO05D006334 5.4e-09 64.3 68 48.5
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 5.4e-09 64.3 65 52.3
Duzib052G1168 Durio zibethinus HOM05D005680 ORTHO05D006334 1.6e-08 62.8 75 45.3
CDE04G1110 Ceratophyllum demersum HOM05D005680 ORTHO05D006334 2.0e-08 62.4 77 48.1
Lsat_1_v5_gn_3_87720 Lactuca sativa HOM05D005680 ORTHO05D006334 2.0e-08 62.4 35 77.1
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 2.0e-08 62.4 63 50.8
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 3.5e-08 61.6 66 53.0
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 5.9e-08 60.8 55 54.5
Dinv38141 Davidia involucrata HOM05D000032 ORTHO05D004656 5.9e-08 60.8 82 40.2
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 1.7e-07 59.3 92 44.6
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 1.7e-07 59.3 65 52.3
Thhalv10000392m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 2.9e-07 58.5 79 44.3
Cpa.g.sc88.61 Carica papaya HOM05D005680 ORTHO05D006334 8.6e-07 57.0 73 47.9
ATR0605G143 Amborella trichopoda HOM05D005680 ORTHO05D006334 1.1e-06 56.6 78 39.7
Zm00001eb316370 Zea mays HOM05D031961 ORTHO05D006334 5.6e-06 54.3 111 36.0


User provided reference genes

Program Settings