Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.9e-114 414.8 216 100.0
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 2.9e-109 398.7 216 97.7
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 2.7e-94 349.0 216 88.9
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 7.0e-71 271.2 225 73.8
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 9.5e-60 234.2 222 70.3
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.1e-54 216.5 236 63.1
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-31 140.6 170 62.9
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.4e-31 139.8 230 44.3
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 9.3e-31 137.9 223 46.2
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.5e-30 136.0 221 44.3
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 3.0e-29 132.9 227 42.7
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 3.9e-29 132.5 225 42.7
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 6.7e-29 131.7 223 44.4
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 8.7e-29 131.3 221 42.5
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 5.6e-28 128.6 225 44.4
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.3e-27 127.5 221 43.0
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.8e-27 126.3 230 43.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 3.1e-26 122.9 233 41.6
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 6.9e-26 121.7 225 42.2
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 9.0e-26 121.3 224 39.3
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.2e-25 120.9 226 43.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.2e-25 120.9 233 41.2
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 1.2e-25 120.9 229 41.0
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.5e-25 120.6 221 42.1
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 5.8e-25 118.6 228 38.6
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.3e-24 117.5 221 42.5
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 2.2e-24 116.7 230 41.3
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.9e-24 116.3 224 42.0
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 4.9e-24 115.5 238 38.2
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.9e-24 115.5 219 42.9
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.4e-24 115.2 228 38.2
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.1e-23 114.4 223 40.4
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-23 114.4 228 39.5
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.1e-23 114.4 216 38.0
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.1e-23 114.4 248 39.5
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-23 114.0 228 39.5
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.4e-23 114.0 223 41.7
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.4e-23 114.0 223 41.7
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.9e-23 113.6 223 39.9
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.4e-23 113.2 227 43.6
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 3.2e-23 112.8 226 38.1
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.2e-23 112.8 224 43.8
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.2e-23 112.5 222 42.3
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 5.5e-23 112.1 216 38.0
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 5.5e-23 112.1 221 42.1
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 9.3e-23 111.3 223 41.7
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.6e-22 110.5 234 39.7
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.6e-22 110.5 224 41.1
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.1e-22 110.2 224 42.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 2.7e-22 109.8 227 37.4
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 3.5e-22 109.4 227 40.5
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.5e-22 109.4 220 40.5
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.3e-21 107.5 221 38.9
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-21 107.5 218 41.7
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.8e-21 107.1 220 40.9
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.8e-21 107.1 220 40.9
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 2.3e-21 106.7 218 39.0
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 3.9e-21 105.9 224 41.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 3.9e-21 105.9 245 39.6
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 6.7e-21 105.1 233 36.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-20 103.6 220 42.3
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-20 103.6 220 42.3
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.5e-20 103.2 226 37.6
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 4.3e-20 102.4 220 38.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 5.6e-20 102.1 225 40.4
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 5.6e-20 102.1 225 40.4
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.3e-19 100.9 226 36.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-19 100.9 216 36.6
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.6e-19 100.5 227 40.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.6e-19 100.5 220 39.5
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.1e-19 100.1 219 37.0
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.1e-19 100.1 214 37.4
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.8e-19 99.0 212 36.8
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.1e-19 98.2 220 37.3
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 8.1e-19 98.2 218 39.0
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.1e-18 97.8 217 38.7
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.8e-18 97.1 223 37.7
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.4e-18 96.7 222 36.5
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.4e-18 96.7 218 36.2
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.9e-18 95.1 217 38.2
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.5e-17 94.0 203 36.0
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.5e-17 94.0 215 37.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.0e-17 93.6 224 37.1
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 2.0e-17 93.6 213 36.2
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 4.5e-17 92.4 180 41.1
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 5.8e-17 92.0 220 37.7
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.0e-16 91.3 230 36.5
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.2e-16 90.1 151 45.7
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.2e-16 90.1 151 45.7
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.9e-16 89.0 147 43.5
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 4.9e-16 89.0 224 33.9
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.5e-16 88.6 215 35.3
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 8.4e-16 88.2 219 36.5
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.4e-15 87.4 233 33.9
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.9e-15 87.0 140 43.6
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.2e-15 86.3 217 36.4
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 3.2e-15 86.3 118 49.2
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.2e-15 85.9 122 43.4
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 5.5e-15 85.5 157 39.5
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.1e-15 85.1 215 34.0
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 7.1e-15 85.1 167 38.9
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 9.3e-15 84.7 145 44.8
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.2e-14 84.3 120 45.8
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.2e-14 84.3 205 36.1
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.7e-14 83.2 194 38.7
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 2.7e-14 83.2 234 34.2
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.6e-14 82.4 217 33.6
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 6.0e-14 82.0 220 33.6
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.9e-14 81.6 222 36.0
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.9e-14 81.6 225 33.3
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.3e-13 80.9 154 39.6
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-13 80.9 154 39.6
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.3e-13 80.9 154 39.6
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.3e-13 80.9 133 41.4
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.3e-13 80.9 224 33.9
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.8e-13 80.5 197 35.5
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.8e-13 80.5 218 35.3
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 2.3e-13 80.1 148 40.5
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.3e-13 80.1 118 46.6
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 2.3e-13 80.1 154 39.0
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 2.3e-13 80.1 154 39.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 3.0e-13 79.7 119 46.2
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.9e-13 79.3 48 81.2
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.9e-13 79.3 170 40.6
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 6.7e-13 78.6 156 40.4
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 2.5e-12 76.6 45 80.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.5e-12 76.6 170 40.0
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 3.3e-12 76.3 226 35.0
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 3.3e-12 76.3 134 42.5
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 3.3e-12 76.3 134 42.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.3e-12 76.3 179 35.8
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.3e-12 76.3 126 41.3
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 4.3e-12 75.9 147 42.9
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 4.3e-12 75.9 179 35.2
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 5.7e-12 75.5 217 32.3
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 5.7e-12 75.5 156 40.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 5.7e-12 75.5 217 30.9
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 7.4e-12 75.1 156 41.0
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 7.4e-12 75.1 156 41.0
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.6e-11 73.9 145 40.7
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.6e-11 73.9 145 40.7
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.6e-11 73.9 252 31.7
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.1e-11 73.6 220 30.9
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.8e-11 73.2 260 31.9
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 8.2e-11 71.6 209 34.4
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 8.2e-11 71.6 53 66.0
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-10 70.9 148 39.9
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.4e-10 70.9 215 31.6
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.4e-10 70.9 220 30.9
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.8e-10 70.5 48 70.8
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 2.4e-10 70.1 221 31.2
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 2.6e-09 66.6 249 29.3
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.4e-09 66.2 212 31.6
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 4.5e-09 65.9 222 34.2
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 4.5e-09 65.9 207 31.4
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 5.9e-09 65.5 222 34.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.0e-08 64.7 253 29.2
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.0e-08 64.7 207 31.9
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.7e-08 63.9 52 59.6
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.2e-08 63.5 99 42.4
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.8e-08 62.8 147 36.1
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 4.2e-07 59.3 236 30.1
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.2e-06 57.8 55 54.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.1e-06 57.0 45 62.2
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.7e-06 56.6 152 32.9
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 3.6e-06 56.2 65 49.2
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 7.9e-06 55.1 45 57.8


User provided reference genes

Program Settings