Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 1.1e-76 290.0 170 100.0
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 6.8e-69 264.2 170 94.7
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 1.7e-48 196.4 153 83.7
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 5.0e-40 168.3 198 62.1
Peaxi162Scf00548g00223 Petunia axillaris HOM05D007502 ORTHO05D010230 8.6e-40 167.5 138 68.8
Nitab4.5_0003129g0050 Nicotiana tabacum HOM05D007502 ORTHO05D010230 5.6e-23 111.7 80 77.5
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 1.7e-19 100.1 171 45.0
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 1.9e-18 96.7 140 48.6
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 1.3e-16 90.5 122 52.5
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 2.5e-15 86.3 180 46.1
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 9.6e-15 84.3 172 48.8
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 2.1e-14 83.2 159 49.7
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 3.6e-14 82.4 174 40.2
MSTRG.3478 Avicennia marina HOM05D007502 ORTHO05D010230 4.8e-14 82.0 128 44.5
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 4.8e-14 82.0 177 39.5
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 4.8e-14 82.0 170 41.8
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 4.8e-14 82.0 174 46.6
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 1.1e-13 80.9 180 41.7
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 1.8e-13 80.1 136 47.8
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 2.4e-13 79.7 167 41.3
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 4.0e-13 79.0 166 40.4
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 5.3e-13 78.6 182 36.3
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 5.3e-13 78.6 162 45.7
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 6.9e-13 78.2 174 36.8
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 1.3e-11 73.9 156 37.2
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 1.7e-11 73.6 162 34.6
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 2.2e-11 73.2 180 48.9
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 2.9e-11 72.8 168 36.9
RhsimUnG0241800 Rhododendron simsii HOM05D007502 ORTHO05D010230 2.9e-11 72.8 102 50.0
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 3.8e-11 72.4 173 43.4
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 3.8e-11 72.4 176 44.9
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 6.4e-11 71.6 170 40.6
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 6.4e-11 71.6 170 40.6
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 1.1e-10 70.9 159 35.2
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 1.4e-10 70.5 168 41.1
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 1.9e-10 70.1 157 35.0
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 9.3e-10 67.8 195 39.5
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 1.2e-09 67.4 174 39.7
ECA238G4396 Erigeron canadensis HOM05D007502 ORTHO05D010230 2.1e-09 66.6 165 35.2
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 3.5e-09 65.9 163 40.5
HanXRQChr01g0002171 Helianthus annuus HOM05D007502 ORTHO05D010230 6.0e-09 65.1 141 36.2
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 7.9e-09 64.7 180 41.7
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 2.3e-08 63.2 167 38.9
GSVIVG01002329001 Vitis vinifera HOM05D007502 ORTHO05D010230 2.3e-08 63.2 178 34.8
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 3.9e-08 62.4 146 37.7
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 5.1e-08 62.0 170 41.2
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 1.1e-07 60.8 200 36.0
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 1.1e-07 60.8 177 35.6
Ca_24677_v3 Cicer arietinum L. HOM05D007502 ORTHO05D010230 1.1e-07 60.8 100 39.0
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 1.5e-07 60.5 167 32.9
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 2.5e-07 59.7 169 32.5
Lsat_1_v5_gn_5_174300 Lactuca sativa HOM05D007502 ORTHO05D010230 5.6e-07 58.5 111 37.8
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 7.4e-07 58.2 166 34.9
Lsat_1_v5_gn_4_132041 Lactuca sativa HOM05D007502 ORTHO05D010230 7.4e-07 58.2 74 50.0
arahy.Tifrunner.gnm1.ann1.W7GVX2 Arachis hypogaea HOM05D007502 ORTHO05D010230 9.6e-07 57.8 170 35.3
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 9.6e-07 57.8 156 36.5
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 1.6e-06 57.0 166 35.5
Aqoxy6G02556 Aquilegia oxysepala HOM05D007502 ORTHO05D010230 2.1e-06 56.6 91 46.2
Actinidia36426 Actinidia chinensis HOM05D001896 ORTHO05D001862 4.8e-06 55.5 76 47.4
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 6.2e-06 55.1 138 31.2


User provided reference genes

Program Settings