Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g036670 Solanum pennellii HOM05D016759 ORTHO05D000169 5.7e-73 278.1 215 100.0
Solyc02g092090.3 Solanum lycopersicum HOM05D016759 ORTHO05D000169 2.8e-72 275.8 215 99.5
PGSC0003DMG400021431 Solanum tuberosum HOM05D016759 ORTHO05D000169 1.0e-61 240.7 222 85.1
Nitab4.5_0001072g0020 Nicotiana tabacum HOM05D016759 ORTHO05D000169 2.4e-55 219.5 220 80.5
CAN.G1343.5 Capsicum annuum HOM05D016759 ORTHO05D000169 1.0e-45 187.6 229 78.2
Nitab4.5_0000142g0350 Nicotiana tabacum HOM05D016759 ORTHO05D000169 4.0e-42 175.6 222 72.5
PGSC0003DMG400005476 Solanum tuberosum HOM05D000697 ORTHO05D000169 6.4e-24 115.2 218 38.1
Cc07_g07330 Coffea canephora HOM05D000754 ORTHO05D000169 7.8e-22 108.2 219 40.2
Lj7P112T12 Lonicera japonica HOM05D000754 ORTHO05D000169 1.7e-21 107.1 202 44.1
Peaxi162Scf00548g00014 Petunia axillaris HOM05D000754 ORTHO05D000169 2.3e-21 106.7 77 70.1
Oeu013337.1 Olea europaea HOM05D000754 ORTHO05D000169 7.3e-20 101.7 212 34.9
Migut.H00326 Erythranthe guttata HOM05D000754 ORTHO05D000169 1.3e-19 100.9 199 38.2
Oeu032433.1 Olea europaea HOM05D000754 ORTHO05D000169 1.6e-19 100.5 214 35.0
Nitab4.5_0006965g0010 Nicotiana tabacum HOM05D000754 ORTHO05D000169 2.8e-19 99.8 248 39.5
Hma1.2p1_1139F.1_g260890 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 6.2e-19 98.6 211 34.6
vmacro23300 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 1.1e-18 97.8 253 46.2
PGSC0003DMG400021433 Solanum tuberosum HOM05D016759 ORTHO05D000169 4.0e-18 95.9 78 71.8
CSS0007195 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 5.3e-18 95.5 196 48.5
CSS0026493 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 1.2e-17 94.4 196 48.0
Rhsim08G0091200 Rhododendron simsii HOM05D000754 ORTHO05D000169 7.6e-17 91.7 260 35.4
CSS0034114 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 2.9e-16 89.7 213 33.3
Rhsim08G0090600 Rhododendron simsii HOM05D000754 ORTHO05D000169 3.8e-16 89.4 260 35.4
QL06p038974 Quercus lobata HOM05D000754 ORTHO05D000169 1.4e-15 87.4 222 33.8
DCAR_010801 Daucus carota HOM05D000754 ORTHO05D000169 1.9e-15 87.0 205 32.7
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 7.1e-15 85.1 219 32.4
Cpa.g.sc129.74 Carica papaya HOM05D000754 ORTHO05D000169 2.1e-14 83.6 210 33.3
Manes.13G109400 Manihot esculenta HOM05D000754 ORTHO05D000169 3.5e-14 82.8 219 32.9
Thecc.01G075900 Theobroma cacao HOM05D000754 ORTHO05D000169 3.5e-14 82.8 218 34.4
Duzib264G0179 Durio zibethinus HOM05D000754 ORTHO05D000169 4.6e-14 82.4 210 31.0
CANSAT01G0483 Cannabis sativa HOM05D000754 ORTHO05D000169 6.0e-14 82.0 202 34.2
Lsat_1_v5_gn_2_80220 Lactuca sativa HOM05D000754 ORTHO05D000169 6.0e-14 82.0 72 58.3
Ciclev10027584m.g Citrus clementina HOM05D000754 ORTHO05D000169 3.9e-13 79.3 209 35.9
Gohir.D12G076700 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.9e-13 79.3 71 52.1
Hma1.2p1_0424F.1_g150490 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 3.9e-13 79.3 200 30.5
Gohir.A11G048900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 5.1e-13 79.0 212 31.6
Lj4P165T20 Lonicera japonica HOM05D000754 ORTHO05D000169 5.1e-13 79.0 69 55.1
vmacro18014 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 6.7e-13 78.6 72 55.6
vmacro23468 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 1.5e-12 77.4 239 43.9
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.9e-12 77.0 71 52.1
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.9e-12 77.0 71 52.1
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 1.9e-12 77.0 223 30.9
Gorai.008G085300 Gossypium raimondii HOM05D000754 ORTHO05D000169 2.5e-12 76.6 71 50.7
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 2.5e-12 76.6 210 32.9
SalBow3G0289 Salvia bowleyana HOM05D000754 ORTHO05D000169 2.5e-12 76.6 201 45.3
Duzib187G1715 Durio zibethinus HOM05D000754 ORTHO05D000169 4.3e-12 75.9 210 32.4
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 5.6e-12 75.5 210 29.0
Gohir.D11G052500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 5.6e-12 75.5 212 30.7
SGA_v2.0_scaffold15G07496 Striga asiatica HOM05D000754 ORTHO05D000169 5.6e-12 75.5 202 32.7
DCAR_025821 Daucus carota HOM05D000754 ORTHO05D000169 7.4e-12 75.1 212 31.6
Oeu033308.1 Olea europaea HOM05D000754 ORTHO05D000169 9.6e-12 74.7 200 30.5
Prupe.6G217300 Prunus persica HOM05D000754 ORTHO05D000169 9.6e-12 74.7 223 30.5
Sopen02g036690 Solanum pennellii HOM05D016759 ORTHO05D000169 1.3e-11 74.3 75 61.3
TWI74G1229 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 1.3e-11 74.3 210 29.5
Potri.014G007100 Populus trichocarpa HOM05D000754 ORTHO05D000169 2.1e-11 73.6 210 32.4
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.8e-11 73.2 71 50.7
Lsat_1_v5_gn_3_86301 Lactuca sativa HOM05D000754 ORTHO05D000169 3.6e-11 72.8 72 52.8
Manes.12G117300 Manihot esculenta HOM05D000754 ORTHO05D000169 4.8e-11 72.4 211 30.8
Gohir.A12G080000 Gossypium hirsutum HOM05D000754 ORTHO05D000169 6.2e-11 72.0 71 47.9
Gorai.007G056900 Gossypium raimondii HOM05D000754 ORTHO05D000169 6.2e-11 72.0 212 29.7
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 8.1e-11 71.6 70 50.0
Aqoxy6G02482 Aquilegia oxysepala HOM05D000754 ORTHO05D000169 1.1e-10 71.2 63 55.6
FAN28G2566 Fragaria x ananassa HOM05D000754 ORTHO05D000169 1.4e-10 70.9 71 50.7
HanXRQChr07g0189251 Helianthus annuus HOM05D000754 ORTHO05D000169 2.4e-10 70.1 74 52.7
CARHR246120 Cardamine hirsuta HOM05D000754 ORTHO05D000169 3.1e-10 69.7 69 55.1
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 4.0e-10 69.3 208 31.7
Sp7g35380 Schrenkiella parvula HOM05D000754 ORTHO05D000169 4.0e-10 69.3 69 53.6
Carub.0007s0252 Capsella rubella HOM05D000754 ORTHO05D000169 6.9e-10 68.6 69 52.2
Duzib147G0338 Durio zibethinus HOM05D000754 ORTHO05D000169 1.2e-09 67.8 210 28.6
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.0e-09 67.0 205 31.7
Nn5g30657 Nelumbo nucifera HOM05D000754 ORTHO05D000169 2.0e-09 67.0 64 48.4
AT4G37730 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 2.6e-09 66.6 69 52.2
Thhalv10027117m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 2.6e-09 66.6 233 30.5
Glyma.17G158900 Glycine max HOM05D000754 ORTHO05D000169 5.8e-09 65.5 70 45.7
Gohir.A12G078400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 5.8e-09 65.5 79 43.0
HanXRQChr09g0255311 Helianthus annuus HOM05D000754 ORTHO05D000169 5.8e-09 65.5 73 45.2
FAN19G0912 Fragaria x ananassa HOM05D000754 ORTHO05D000169 7.6e-09 65.1 225 31.1
Atru.chr3.1056 Acer truncatum HOM05D000754 ORTHO05D000169 9.9e-09 64.7 199 28.6
C01p01480 Brassica napus HOM05D000754 ORTHO05D000169 9.9e-09 64.7 69 49.3
Ca_22096_v3 Cicer arietinum L. HOM05D000754 ORTHO05D000169 9.9e-09 64.7 208 40.4
TAR628G1392 Trochodendron aralioides HOM05D000754 ORTHO05D000169 9.9e-09 64.7 205 28.8
C02p64350 Brassica napus HOM05D000754 ORTHO05D000169 1.3e-08 64.3 72 45.8
THA.LOC104827731 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 1.3e-08 64.3 216 25.9
VMungo1215G0337 Vigna mungo HOM05D000754 ORTHO05D000169 1.3e-08 64.3 69 47.8
MBI16_g45152_MAGBIO Magnolia biondii HOM05D000754 ORTHO05D000169 1.7e-08 63.9 58 58.6
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 1.7e-08 63.9 225 32.4
Aa31LG6G14610 Aethionema arabicum HOM05D000754 ORTHO05D000169 2.2e-08 63.5 69 49.3
HanXRQChr14g0445391 Helianthus annuus HOM05D000754 ORTHO05D000169 2.2e-08 63.5 72 51.4
A01p01320 Brassica napus HOM05D000754 ORTHO05D000169 2.9e-08 63.2 69 47.8
A02p44090 Brassica napus HOM05D000754 ORTHO05D000169 2.9e-08 63.2 72 44.4
BraA01t00129Z Brassica rapa HOM05D000754 ORTHO05D000169 2.9e-08 63.2 69 47.8
BraA02t09332Z Brassica rapa HOM05D000754 ORTHO05D000169 2.9e-08 63.2 72 44.4
Gohir.D12G076600 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.9e-08 63.2 79 40.5
Medtr4g097440 Medicago truncatula HOM05D000754 ORTHO05D000169 2.9e-08 63.2 208 28.4
AL7G12950 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 3.8e-08 62.8 69 49.3
CiPaw.01G002300 Carya illinoinensis HOM05D000754 ORTHO05D000169 3.8e-08 62.8 218 36.2
Psat0ss26165g0040 Pisum sativum HOM05D000754 ORTHO05D000169 3.8e-08 62.8 202 27.2
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 4.9e-08 62.4 205 27.8
BcaC03g18357 Brassica carinata HOM05D000754 ORTHO05D000169 4.9e-08 62.4 72 44.4
BolC2t12498H Brassica oleracea HOM05D000754 ORTHO05D000169 4.9e-08 62.4 72 44.4
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 6.4e-08 62.0 74 45.9
MSTRG.2807 Avicennia marina HOM05D000754 ORTHO05D000169 6.4e-08 62.0 56 53.6
Gorai.008G085200 Gossypium raimondii HOM05D000754 ORTHO05D000169 6.4e-08 62.0 79 40.5
Nn6g34519 Nelumbo nucifera HOM05D000754 ORTHO05D000169 6.4e-08 62.0 193 28.0
TPR.G3728 Trifolium pratense HOM05D000754 ORTHO05D000169 6.4e-08 62.0 208 26.9
BolC1t00145H Brassica oleracea HOM05D000754 ORTHO05D000169 8.4e-08 61.6 69 47.8
Medtr5g015090 Medicago truncatula HOM05D000754 ORTHO05D000169 1.4e-07 60.8 68 47.1
unitig_52.g17604 Utricularia gibba HOM05D000754 ORTHO05D000169 1.4e-07 60.8 73 46.6
HanXRQChr12g0376421 Helianthus annuus HOM05D000754 ORTHO05D000169 1.9e-07 60.5 72 45.8
PGR004G2429 Punica granatum HOM05D000754 ORTHO05D000169 1.9e-07 60.5 209 40.2
Sp4g01890 Schrenkiella parvula HOM05D000754 ORTHO05D000169 1.9e-07 60.5 69 43.5
SpUn0042_0040 Schrenkiella parvula HOM05D000754 ORTHO05D000169 1.9e-07 60.5 69 43.5
Sabra14G0006500 Salix brachista HOM05D000754 ORTHO05D000169 2.4e-07 60.1 193 31.1
Sp2g28950 Schrenkiella parvula HOM05D000754 ORTHO05D000169 2.4e-07 60.1 72 43.1
Glyma.01G195800 Glycine max HOM05D000754 ORTHO05D000169 3.2e-07 59.7 199 29.1
Glyma.11G045900 Glycine max HOM05D000754 ORTHO05D000169 3.2e-07 59.7 69 44.9
Cfa004385 Carpinus fangiana HOM05D000754 ORTHO05D000169 4.2e-07 59.3 227 34.4
TAR376G1084 Trochodendron aralioides HOM05D000754 ORTHO05D000169 4.2e-07 59.3 194 28.4
CARHR279860 Cardamine hirsuta HOM05D000754 ORTHO05D000169 5.5e-07 58.9 73 41.1
BcaB02g09902 Brassica carinata HOM05D000754 ORTHO05D000169 7.1e-07 58.5 70 41.4
Hma1.2p1_1170F.1_g263430 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 7.1e-07 58.5 56 50.0
Phvul.002G009200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 7.1e-07 58.5 69 46.4
Sc07g0000450 Simmondsia chinensis HOM05D000754 ORTHO05D000169 7.1e-07 58.5 76 42.1
PGR102G3091 Punica granatum HOM05D000754 ORTHO05D000169 9.3e-07 58.2 212 36.8
BcaC06g33372 Brassica carinata HOM05D000754 ORTHO05D000169 1.2e-06 57.8 236 28.4
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 1.2e-06 57.8 67 41.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 1.2e-06 57.8 67 41.8
CAN.G1239.10 Capsicum annuum HOM05D000754 ORTHO05D000169 1.2e-06 57.8 54 53.7
Glyma.05G108200 Glycine max HOM05D000754 ORTHO05D000169 1.2e-06 57.8 73 45.2
Sc03g0002510 Simmondsia chinensis HOM05D000697 ORTHO05D000169 1.2e-06 57.8 69 44.9
BcaC01g02827 Brassica carinata HOM05D000754 ORTHO05D000169 1.6e-06 57.4 67 43.3
CsaV3_6G044300 Cucumis sativus L. HOM05D000754 ORTHO05D000169 2.1e-06 57.0 59 50.8
SalBow2G1956 Salvia bowleyana HOM05D000754 ORTHO05D000169 2.1e-06 57.0 60 51.7
ClCG01G017780 Citrullus lanatus HOM05D000754 ORTHO05D000169 3.5e-06 56.2 198 29.8
MELO3C007655.2 Cucumis melo HOM05D000754 ORTHO05D000169 3.5e-06 56.2 59 50.8
THA.LOC104804197 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 3.5e-06 56.2 69 46.4
AL334U10020 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 4.6e-06 55.8 210 24.8
Cc10_g07580 Coffea canephora HOM05D000754 ORTHO05D000169 4.6e-06 55.8 61 47.5
AL8G43580 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 6.0e-06 55.5 72 40.3
Lj4g0006564 Lotus japonicus HOM05D000754 ORTHO05D000169 6.0e-06 55.5 204 28.4
MSTRG.22210 Avicennia marina HOM05D000754 ORTHO05D000169 7.9e-06 55.1 54 51.9


User provided reference genes

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