Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 5.8e-91 338.2 268 100.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 5.8e-91 338.2 268 100.0
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 5.4e-89 331.6 268 98.1
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.3e-85 320.5 271 96.7
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.6e-85 320.1 271 96.7
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 4.0e-84 315.5 271 94.5
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 3.9e-71 272.3 273 85.0
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 5.1e-71 271.9 244 96.3
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 4.8e-69 265.4 275 83.6
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.0e-68 262.3 268 85.8
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.5e-67 260.4 266 83.8
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.6e-67 259.6 268 83.6
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 2.6e-67 259.6 264 85.2
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 5.8e-67 258.5 268 84.0
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 5.8e-67 258.5 271 82.7
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.3e-66 257.3 268 83.6
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 2.2e-66 256.5 268 74.6
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 2.9e-66 256.1 255 88.2
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.9e-66 255.4 271 83.4
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 6.5e-66 255.0 268 84.0
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.1e-65 254.2 264 84.1
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.5e-65 253.1 270 83.0
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 3.2e-65 252.7 274 81.8
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 3.2e-65 252.7 256 84.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 3.2e-65 252.7 268 83.2
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 5.5e-65 251.9 273 82.1
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 5.5e-65 251.9 269 84.4
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.1e-65 251.5 268 82.5
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.1e-65 251.5 268 82.5
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 9.3e-65 251.1 272 83.5
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.6e-64 250.4 272 83.5
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.1e-64 250.0 268 82.5
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 2.7e-64 249.6 268 82.1
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 2.7e-64 249.6 248 87.9
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.5e-64 249.2 262 84.4
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.5e-64 249.2 272 83.1
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 7.9e-64 248.1 262 84.0
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 7.9e-64 248.1 262 84.0
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 7.9e-64 248.1 268 83.2
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.3e-63 247.3 268 79.9
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.3e-63 247.3 269 82.9
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.3e-63 247.3 269 82.9
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.8e-63 246.9 250 88.4
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.8e-63 246.9 268 81.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.8e-63 246.9 271 82.7
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.3e-63 246.5 262 83.2
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 3.0e-63 246.1 264 84.5
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.9e-63 245.7 263 84.0
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 5.1e-63 245.4 272 82.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.1e-63 245.4 271 82.3
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.5e-62 243.8 255 84.7
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.5e-62 243.0 262 84.4
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.5e-62 243.0 266 81.6
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 5.7e-62 241.9 262 82.4
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 5.7e-62 241.9 262 82.4
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 7.4e-62 241.5 270 79.6
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.4e-62 241.5 266 81.2
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.3e-61 240.7 273 81.3
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.7e-61 239.2 264 81.8
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 4.8e-61 238.8 275 81.1
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 6.3e-61 238.4 262 82.1
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.1e-60 237.7 262 80.2
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.4e-60 236.5 274 75.5
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.3e-60 235.3 262 82.4
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 5.3e-60 235.3 262 82.4
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 6.9e-60 235.0 259 81.1
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 6.9e-60 235.0 261 81.6
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 9.0e-60 234.6 250 85.2
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 9.0e-60 234.6 274 76.3
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.5e-59 233.8 272 79.0
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 2.0e-59 233.4 273 81.3
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 7.7e-59 231.5 262 81.3
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.0e-58 231.1 262 82.1
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 6.5e-58 228.4 262 81.3
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.9e-57 226.9 258 75.2
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.5e-57 226.5 258 80.6
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 3.2e-57 226.1 262 76.7
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.6e-56 223.8 251 80.1
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.6e-56 223.8 256 81.2
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 3.6e-56 222.6 261 78.9
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.6e-56 222.2 267 77.2
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 6.1e-56 221.9 273 77.3
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.0e-55 221.1 262 77.5
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.0e-55 221.1 262 77.5
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.4e-55 220.7 266 77.4
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.4e-55 220.7 268 78.4
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 3.0e-55 219.5 264 79.9
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 3.9e-55 219.2 268 78.0
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 3.9e-55 219.2 268 76.5
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 6.7e-55 218.4 252 81.7
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 6.7e-55 218.4 266 78.2
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.5e-54 217.2 251 80.1
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.5e-54 217.2 271 76.8
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.0e-54 216.9 274 76.3
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 2.0e-54 216.9 252 81.7
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.5e-54 216.5 267 77.5
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 4.3e-54 215.7 271 77.1
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 5.7e-54 215.3 271 77.1
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 5.7e-54 215.3 271 77.1
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 7.4e-54 214.9 266 77.8
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.7e-53 213.8 275 74.5
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.7e-53 213.8 277 52.0
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 3.7e-53 212.6 272 75.4
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 4.8e-53 212.2 266 77.4
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 4.8e-53 212.2 244 82.8
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 6.3e-53 211.8 271 75.6
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.4e-52 210.7 267 76.4
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.4e-52 210.7 263 77.6
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.8e-52 210.3 258 80.6
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.4e-52 209.9 268 76.9
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 2.4e-52 209.9 267 76.4
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 4.1e-52 209.1 267 76.0
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 5.3e-52 208.8 272 76.8
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 6.9e-52 208.4 268 76.5
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 6.9e-52 208.4 268 76.5
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 6.9e-52 208.4 268 76.5
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 6.9e-52 208.4 268 76.5
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 6.9e-52 208.4 263 75.3
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.0e-51 206.8 253 79.1
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 2.6e-51 206.5 267 75.3
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.9e-50 203.0 276 42.8
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 6.5e-50 201.8 259 73.0
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 6.5e-50 201.8 252 79.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 8.5e-50 201.4 256 78.1
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 8.5e-50 201.4 239 83.7
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.1e-49 201.1 274 73.7
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.9e-49 200.3 229 86.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 3.2e-49 199.5 270 75.9
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.1e-48 196.8 252 77.4
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.6e-48 196.1 222 88.3
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 3.6e-48 196.1 260 74.2
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.0e-47 194.5 263 73.0
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.4e-47 194.1 263 73.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 8.8e-47 191.4 267 67.0
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.6e-46 189.9 224 85.7
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 9.7e-46 188.0 263 76.0
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.3e-45 187.6 229 84.7
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.8e-45 186.4 211 88.6
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.3e-44 182.2 252 73.8
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-40 170.6 271 57.6
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-40 170.6 236 78.8
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 1.1e-38 164.5 216 82.4
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.7e-34 150.6 197 85.3
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.6e-32 144.1 270 68.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 8.0e-32 141.7 83 83.1
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.2e-31 139.0 83 75.9
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.6e-30 136.7 85 78.8
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.6e-30 136.7 267 67.8
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 2.6e-30 136.7 265 57.4
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.4e-30 136.3 215 77.2
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.7e-29 132.9 100 66.0
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.1e-25 121.3 255 61.6
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.4e-23 114.4 83 69.9
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 8.8e-23 111.7 86 68.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.4e-20 104.4 84 59.5
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.0e-14 84.0 53 81.1
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.9e-09 67.4 256 56.2
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.2e-07 59.3 59 45.8
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 8.9e-07 58.5 101 33.7
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 5.8e-06 55.8 63 52.4
Psat5g014720 Pisum sativum HOM05D002919 ORTHO05D003327 7.5e-06 55.5 71 40.8
Cpa.g.sc5.313 Carica papaya HOM05D000094 ORTHO05D002904 9.8e-06 55.1 97 40.2
Nitab4.5_0001961g0060 Nicotiana tabacum HOM05D000094 ORTHO05D001056 9.8e-06 55.1 94 34.0


User provided reference genes

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