Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 8.3e-202 706.8 357 100.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.9e-198 695.7 357 98.3
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 4.6e-168 594.7 357 85.7
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.3e-127 460.3 362 69.3
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 9.7e-126 454.1 366 68.6
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-121 440.3 353 69.4
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 7.5e-62 241.9 453 39.5
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 5.1e-58 229.2 453 38.6
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.6e-56 224.2 380 42.1
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 1.4e-55 221.1 422 40.8
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.3e-55 220.3 452 38.3
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 6.8e-55 218.8 436 36.9
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.0e-54 217.2 438 36.1
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.7e-53 214.2 442 36.0
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.8e-53 213.0 433 38.6
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 4.9e-53 212.6 441 39.5
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 8.4e-53 211.8 433 36.3
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.1e-52 211.5 445 37.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.4e-52 211.1 440 38.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 3.2e-52 209.9 439 36.4
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.2e-51 208.0 442 36.4
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 2.1e-51 207.2 443 36.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.7e-51 206.8 424 38.2
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 4.6e-51 206.1 439 35.1
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 6.6e-50 202.2 446 36.1
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.6e-50 201.8 460 36.5
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.5e-49 201.1 432 36.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 2.5e-49 200.3 443 36.8
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.6e-48 197.6 433 36.3
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.6e-48 197.6 439 35.8
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.6e-48 197.6 432 36.1
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.6e-48 197.6 445 34.4
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.1e-48 197.2 446 35.4
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.8e-48 196.8 434 35.7
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.1e-47 194.9 458 34.1
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.4e-47 194.5 387 35.9
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 5.2e-47 192.6 452 35.8
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 9.0e-47 191.8 411 35.5
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 2.0e-46 190.7 447 35.1
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 2.6e-46 190.3 447 34.2
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.4e-46 189.9 494 33.4
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.4e-46 189.9 456 34.0
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 4.4e-46 189.5 461 35.6
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 9.9e-46 188.3 449 35.2
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.8e-45 186.4 432 33.8
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.8e-45 186.4 444 34.7
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.4e-44 184.5 423 35.5
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.3e-44 181.8 433 33.5
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 3.5e-43 179.9 390 35.4
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 6.0e-43 179.1 480 32.7
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 7.8e-43 178.7 436 33.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.1e-42 176.0 431 32.5
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.1e-42 176.0 456 33.6
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 8.7e-42 175.3 454 32.6
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.1e-41 174.9 372 37.9
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.5e-41 174.5 452 32.5
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.5e-41 173.7 443 34.5
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.6e-40 171.0 415 36.4
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.1e-40 170.6 397 36.0
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 2.8e-40 170.2 414 36.7
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.1e-39 168.3 446 32.5
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-39 167.9 412 35.4
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 1.4e-39 167.9 382 35.1
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.4e-39 167.2 412 35.4
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 1.2e-38 164.9 426 32.9
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.5e-38 164.5 475 31.2
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.6e-38 163.7 416 34.4
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 3.4e-38 163.3 447 33.1
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 3.4e-38 163.3 411 34.8
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 7.6e-38 162.2 437 34.3
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.7e-37 161.0 435 33.3
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.2e-37 160.6 413 34.9
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 3.8e-37 159.8 428 32.0
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 4.9e-37 159.5 428 31.5
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 6.4e-37 159.1 421 33.5
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.2e-36 156.8 405 31.9
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.2e-36 156.4 446 31.8
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 7.1e-36 155.6 427 31.9
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 2.1e-35 154.1 419 32.0
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 3.5e-35 153.3 384 32.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 3.5e-35 153.3 434 30.6
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 4.6e-35 152.9 425 33.4
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 6.0e-35 152.5 433 32.1
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.3e-34 151.4 423 33.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 3.9e-34 149.8 414 31.4
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 5.1e-34 149.4 428 30.8
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.1e-34 149.4 434 32.7
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 6.7e-34 149.1 420 30.7
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.1e-33 148.3 422 33.2
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 4.3e-33 146.4 466 30.0
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 5.6e-33 146.0 421 30.6
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 7.4e-33 145.6 433 32.8
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 9.6e-33 145.2 443 31.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 9.6e-33 145.2 428 32.0
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.6e-32 144.4 321 33.6
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.7e-32 143.3 434 32.0
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 8.1e-32 142.1 358 33.5
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.4e-31 140.6 466 32.2
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.0e-31 139.8 317 35.3
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 4.0e-31 139.8 441 32.0
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.3e-31 139.4 440 29.8
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 6.9e-31 139.0 458 31.2
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 9.0e-31 138.7 391 33.5
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.5e-30 137.9 430 30.7
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.0e-30 137.5 443 32.3
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.6e-30 137.1 337 32.3
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 2.6e-30 137.1 398 32.2
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.4e-30 136.7 432 30.1
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.4e-30 136.7 420 30.7
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 4.5e-30 136.3 425 29.9
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 4.5e-30 136.3 420 32.1
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 7.6e-30 135.6 424 31.4
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 7.6e-30 135.6 448 29.9
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.3e-29 134.8 427 29.5
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.7e-29 134.4 442 30.8
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 2.9e-29 133.7 432 29.2
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.9e-29 133.7 441 31.1
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.9e-29 132.9 414 30.7
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 6.4e-29 132.5 372 32.3
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 8.4e-29 132.1 442 31.0
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 9.3e-28 128.6 417 30.0
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.2e-27 128.3 413 30.5
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.6e-27 127.9 308 32.8
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.6e-27 127.9 413 31.7
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.7e-27 127.1 387 31.3
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 4.6e-27 126.3 425 28.9
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 4.6e-27 126.3 316 34.5
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 6.0e-27 125.9 448 29.7
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.3e-26 124.8 419 29.1
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 3.0e-26 123.6 415 30.1
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.9e-26 123.2 418 29.9
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 6.7e-26 122.5 444 28.8
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 8.7e-26 122.1 412 28.4
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.1e-25 121.7 415 29.9
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.5e-25 120.6 233 38.6
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.4e-25 119.0 412 28.6
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.8e-24 117.1 418 27.5
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.8e-24 116.3 417 29.0
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 8.2e-24 115.5 429 28.2
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 8.2e-24 115.5 292 31.8
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.1e-23 115.2 416 29.1
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.4e-23 114.8 410 28.3
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.1e-23 113.6 348 31.6
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 4.0e-23 113.2 339 31.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 4.0e-23 113.2 337 30.3
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 6.9e-23 112.5 421 28.0
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 9.0e-23 112.1 254 35.4
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.2e-21 107.5 437 26.8
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.9e-21 107.1 413 28.6
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.1e-20 105.1 417 29.7
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 3.2e-20 103.6 438 29.2
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 7.1e-20 102.4 344 29.4
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.2e-19 101.7 435 26.2
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 4.6e-19 99.8 429 26.8
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 1.0e-18 98.6 400 28.5
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 6.7e-18 95.9 413 27.1
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.4e-15 88.2 390 27.4
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.4e-15 88.2 439 23.5
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.4e-15 87.4 439 23.2
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-14 85.1 271 30.6
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 2.6e-14 84.0 188 34.6
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.9e-14 82.8 298 29.2
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 5.9e-14 82.8 422 27.7
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.7e-13 81.3 350 26.0
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.1e-12 78.6 423 24.8
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 7.2e-12 75.9 379 26.4
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 2.1e-11 74.3 183 34.4
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 7.9e-11 72.4 241 30.7
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 3.3e-09 67.0 392 25.0
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.1e-07 62.0 121 37.2
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.1e-07 62.0 144 37.5
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.4e-07 60.8 265 27.2
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 4.1e-07 60.1 148 36.5
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.5e-06 58.2 159 28.9
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.5e-06 58.2 249 25.7
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 2.6e-06 57.4 405 24.9
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 3.4e-06 57.0 67 46.3


User provided reference genes

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