Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.4e-144 515.0 337 100.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 4.8e-143 511.5 337 96.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 2.1e-130 469.5 341 90.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.7e-112 408.3 273 78.8
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.7e-112 408.3 293 78.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 3.5e-109 399.1 285 74.4
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 4.0e-97 359.0 288 65.6
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.1e-93 346.7 285 65.6
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.3e-91 339.0 288 62.8
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 4.3e-91 339.0 285 63.5
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 9.5e-91 337.8 290 67.6
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.1e-89 334.3 253 73.1
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 6.8e-89 331.6 298 62.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.8e-85 318.2 320 56.9
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.8e-85 318.2 320 56.9
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 7.3e-83 311.6 240 67.1
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 7.3e-83 311.6 320 56.6
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.8e-82 309.7 292 60.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.4e-81 306.6 288 59.7
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 3.4e-80 302.8 287 59.9
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 3.0e-76 289.7 291 57.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.9e-76 289.3 290 56.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 6.6e-76 288.5 293 59.0
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 3.3e-75 286.2 305 55.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.3e-75 285.8 286 57.0
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 6.2e-74 282.0 290 56.2
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.1e-74 281.6 288 56.6
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 8.1e-74 281.6 288 56.6
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 2.4e-73 280.0 298 59.4
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.3e-73 278.9 287 56.1
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.0e-72 276.9 297 55.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 3.4e-72 276.2 289 56.1
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.4e-72 276.2 285 56.1
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 9.9e-72 274.6 297 55.9
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 8.4e-71 271.6 284 56.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.4e-70 270.0 286 53.5
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 3.2e-70 269.6 307 54.7
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 2.7e-69 266.5 307 52.8
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.3e-68 263.5 291 54.6
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.9e-68 262.7 291 54.3
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.1e-67 261.2 297 51.9
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.1e-67 261.2 280 57.1
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.5e-67 260.8 284 55.6
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.6e-66 257.3 294 52.0
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 8.1e-66 255.0 284 52.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.4e-65 254.2 285 50.2
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.4e-64 249.6 286 52.1
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.2e-63 246.9 289 51.9
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.8e-63 246.1 279 52.7
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.9e-63 245.7 286 51.7
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 8.4e-63 245.0 284 51.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.1e-62 244.6 292 52.7
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.1e-62 244.6 286 51.0
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.4e-62 243.4 286 50.7
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.4e-62 243.4 286 50.7
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.2e-62 243.0 286 50.7
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.2e-62 243.0 213 62.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 3.2e-62 243.0 285 54.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 7.1e-62 241.9 289 51.9
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 7.1e-62 241.9 293 51.5
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 9.3e-62 241.5 298 51.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 9.3e-62 241.5 263 53.6
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.6e-61 240.7 286 50.7
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.6e-61 240.7 284 52.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.5e-61 239.6 281 50.5
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.6e-61 239.2 286 51.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 6.0e-61 238.8 288 51.7
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.0e-61 238.8 230 57.8
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 7.9e-61 238.4 297 51.2
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.0e-60 238.0 291 49.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 3.0e-60 236.5 294 48.3
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.0e-60 236.5 294 52.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.7e-60 235.3 227 58.1
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 6.7e-60 235.3 227 58.1
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.5e-59 233.4 307 47.6
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.6e-59 232.3 294 52.4
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.3e-58 231.1 286 51.0
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 3.7e-58 229.6 282 48.2
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.8e-58 229.2 283 50.5
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 4.8e-58 229.2 285 50.2
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 4.8e-58 229.2 285 49.1
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.2e-58 228.8 285 48.4
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 6.2e-58 228.8 286 50.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.1e-57 228.0 288 50.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.1e-57 228.0 288 49.3
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.8e-57 227.3 169 71.0
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.8e-57 227.3 293 47.4
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 9.0e-57 224.9 166 71.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.3e-55 221.1 303 47.9
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 8.4e-55 218.4 289 47.8
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 8.4e-55 218.4 288 47.9
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.9e-54 217.2 283 45.6
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 5.5e-54 215.7 338 42.0
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 9.3e-54 214.9 294 48.6
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 9.3e-54 214.9 294 48.6
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 9.3e-54 214.9 289 47.1
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.6e-53 214.2 289 48.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.1e-53 213.8 292 47.3
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.1e-53 213.8 285 46.3
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.7e-53 213.4 125 82.4
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 4.6e-53 212.6 291 48.1
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.0e-52 211.5 291 47.4
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.8e-52 210.7 272 48.9
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 3.0e-52 209.9 294 47.3
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 5.1e-52 209.1 290 46.6
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 1.9e-51 207.2 250 52.4
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.9e-51 207.2 292 46.6
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 3.3e-51 206.5 285 48.1
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 3.3e-51 206.5 291 47.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 7.4e-51 205.3 290 46.9
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.6e-50 204.1 295 48.8
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 4.8e-50 202.6 286 46.9
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.4e-49 201.1 289 46.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.4e-49 200.3 286 47.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.4e-49 200.3 292 46.2
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.1e-49 199.5 294 46.9
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.1e-49 199.5 162 66.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 4.1e-49 199.5 226 54.9
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 9.0e-49 198.4 292 49.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.4e-48 196.4 298 47.0
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 4.5e-48 196.1 297 46.1
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.5e-48 196.1 292 47.9
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 5.9e-48 195.7 159 62.3
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 7.6e-48 195.3 296 44.6
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.2e-47 193.7 291 45.7
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 6.5e-47 192.2 178 60.1
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.4e-46 191.0 296 47.3
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.5e-46 190.3 285 45.6
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.6e-45 187.6 286 46.5
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.5e-45 186.4 304 44.1
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 4.6e-45 186.0 287 44.3
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.3e-44 184.5 288 46.2
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.5e-43 180.3 162 61.1
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 9.7e-43 178.3 294 41.5
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.0e-40 170.6 291 40.2
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.6e-40 170.2 283 41.0
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.6e-40 170.2 167 56.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 7.7e-40 168.7 288 39.9
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.5e-39 165.6 243 45.3
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 5.5e-38 162.5 131 65.6
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 6.1e-37 159.1 289 40.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.0e-36 156.8 291 38.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.7e-34 149.8 147 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 5.3e-33 146.0 181 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.9e-33 145.6 118 61.9
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.9e-31 140.2 132 59.1
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.0e-31 139.4 113 62.8
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.5e-31 139.0 100 72.0
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-30 138.3 135 54.1
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.2e-30 136.7 132 59.1
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.1e-25 119.8 76 75.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.5e-22 110.5 138 42.8
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.6e-19 100.5 101 58.4
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 4.8e-18 96.3 147 43.5
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 3.8e-15 86.7 163 41.7
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.2e-11 75.1 55 61.8
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 9.1e-09 65.5 92 44.6
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.0e-07 62.0 153 38.6
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.0e-07 62.0 98 42.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-07 61.6 46 63.0
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.9e-06 57.8 98 35.7


User provided reference genes

Program Settings