Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 4373.9 2430 100.0
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 4167.5 2318 99.0
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 3821.2 2450 87.3
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 3579.6 2460 82.8
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 3576.9 2460 82.6
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 3367.8 2596 75.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2237.6 2506 58.9
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2088.9 2493 55.9
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2020.0 2521 53.7
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 2016.1 2492 53.2
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2009.2 2510 54.1
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1985.7 2537 53.2
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1978.0 2513 52.8
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1957.2 2522 52.9
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1937.2 2525 53.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1914.8 2490 52.0
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1906.7 2508 51.8
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1903.6 2176 58.0
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1894.8 2512 51.5
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1892.5 2545 50.9
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1890.5 2510 51.6
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1883.6 2508 53.5
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1882.5 2538 51.3
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1881.7 2559 50.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1875.5 2512 51.4
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1859.3 2524 50.9
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1858.2 2532 50.9
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1851.3 2566 50.8
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1840.1 2512 51.2
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1836.6 2521 50.6
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1833.2 2573 50.3
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1828.1 2572 50.2
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1825.4 2564 50.4
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1823.9 2493 52.9
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1821.2 2465 51.2
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1817.0 2503 51.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1815.4 2469 52.4
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1814.7 2506 51.8
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1799.3 2533 49.8
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1791.5 2522 50.2
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1790.8 2492 51.3
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1769.6 2509 50.1
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1766.9 2509 50.1
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1765.7 2515 49.7
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1753.8 2470 50.0
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1749.6 2482 49.8
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1736.1 2025 57.0
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1730.3 2535 48.6
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1727.2 2509 50.3
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1726.8 2511 48.7
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1700.3 2506 48.8
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1672.5 2499 49.2
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1672.1 2523 48.3
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1663.3 2300 51.5
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1661.7 2488 49.0
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1659.4 2495 48.7
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1659.4 2515 47.8
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1649.4 2517 48.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1647.1 2447 48.6
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1643.6 2491 47.8
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1639.0 2516 46.2
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1625.9 2505 47.7
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1608.2 2492 47.2
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1603.6 2489 47.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1602.8 2517 48.2
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1588.5 2499 46.5
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1586.2 2499 47.4
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1581.6 2518 47.7
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1575.1 2507 47.5
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1560.0 2451 46.6
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1550.4 2560 46.8
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1540.0 2437 46.1
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1524.6 2479 46.3
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1521.5 2492 45.3
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1513.0 2570 43.7
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1503.0 2501 46.3
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1489.2 2383 46.0
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1483.4 2467 45.2
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1481.5 2496 45.9
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1445.6 2453 45.7
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1367.1 2477 43.4
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1357.8 2514 43.8
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1347.4 2612 41.0
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1347.0 2498 43.8
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1342.8 2476 43.2
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1333.9 2486 44.2
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1316.6 2616 40.8
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1305.8 1730 51.2
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1303.5 1882 49.3
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1298.9 2469 42.5
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1289.2 2529 40.8
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1256.9 2486 42.7
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1246.5 2527 40.9
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1155.2 2582 39.8
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1144.0 2482 41.1
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1107.4 2475 40.9
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1081.6 2476 39.5
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 3.3e-311 1073.2 2432 39.7
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 5.9e-299 1032.3 2417 39.8
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.7e-298 1030.8 1291 52.1
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 4.5e-275 953.0 2399 36.9
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 4.8e-269 932.9 2386 37.7
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 2.1e-264 917.5 1701 45.1
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 4.7e-264 916.4 958 56.9
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 3.9e-242 843.6 2506 36.9
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.6e-235 821.6 440 93.6
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.3e-229 802.0 2722 35.8
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.6e-224 785.0 1053 51.6
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.6e-217 759.2 708 61.6
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.7e-210 738.4 944 55.2
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 9.9e-206 722.6 2409 34.5
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 2.9e-205 721.1 1028 51.8
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 6.2e-192 676.8 2401 34.4
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 6.2e-192 676.8 2401 34.4
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 8.2e-192 676.4 2417 34.4
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 6.9e-191 673.3 2417 34.3
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.7e-187 661.4 2444 33.9
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.9e-175 620.2 970 47.3
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 6.3e-168 597.0 1928 36.6
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 8.0e-163 580.1 2561 30.3
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 5.3e-159 567.4 572 59.3
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 9.4e-156 556.6 1800 31.8
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 3.2e-148 531.6 1287 38.2
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 9.4e-148 530.0 504 56.5
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 5.5e-140 504.2 925 41.2
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 3.2e-119 435.3 780 41.7
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.2e-112 412.5 663 45.1
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 2.0e-97 362.8 1813 30.3
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 5.8e-97 361.3 2836 28.5
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.7e-94 352.4 1217 32.5
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 2.7e-86 325.9 981 33.6
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 7.9e-86 324.3 2721 29.3
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 7.1e-71 274.6 303 50.2
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 2.2e-64 253.1 427 39.3
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.0e-61 242.7 2765 27.8
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.7e-59 236.9 1046 31.6
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.3e-53 216.5 2736 27.2
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 3.7e-51 209.1 562 33.8
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 4.8e-51 208.8 249 54.6
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 2.4e-50 206.5 243 54.3
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.6e-46 193.7 2407 25.5
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 8.2e-43 181.4 560 32.0
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 9.1e-42 177.9 308 40.9
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 8.0e-38 164.9 222 45.9
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-30 141.0 328 36.0
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 3.6e-30 139.4 507 33.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.4e-26 127.5 174 50.0
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.8e-26 127.1 161 52.8
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 9.5e-23 114.8 317 33.8
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 6.1e-22 112.1 2178 26.6
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 6.1e-22 112.1 250 38.4
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 2.8e-19 103.2 125 49.6
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 3.6e-14 86.3 145 44.1
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 4.4e-12 79.3 63 61.9
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 4.4e-12 79.3 62 62.9
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.8e-12 78.2 123 42.3
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 3.7e-11 76.3 74 59.5
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 3.0e-08 66.6 58 56.9
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.2e-06 61.2 128 36.7
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 3.6e-06 59.7 110 42.7
unitig_899.g14934 Utricularia gibba HOM05D004560 ORTHO05D037471 3.6e-06 59.7 75 53.3


User provided reference genes

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