Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 0.0e+00 1369.4 675 100.0
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 0.0e+00 1294.6 675 94.1
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 0.0e+00 1286.6 675 95.0
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 0.0e+00 1120.5 661 84.1
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 0.0e+00 1089.7 663 82.5
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 3.0e-309 1064.7 682 80.2
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.1e-259 899.0 591 75.6
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.8e-144 517.3 696 43.2
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 3.0e-144 516.5 687 43.4
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 3.3e-143 513.1 684 44.6
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 5.5e-138 495.7 698 42.1
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 2.1e-137 493.8 688 43.0
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.3e-134 484.6 619 44.7
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 8.2e-134 481.9 607 44.6
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.8e-133 480.7 686 42.0
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.5e-127 461.1 684 40.1
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.7e-126 457.6 687 39.6
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.1e-125 454.9 688 40.6
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 3.4e-124 449.9 682 39.6
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 4.5e-124 449.5 679 39.5
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 2.2e-123 447.2 702 39.0
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 1.4e-122 444.5 684 40.1
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 3.6e-121 439.9 678 38.6
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.9e-121 438.7 672 39.6
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.0e-120 436.8 713 38.0
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 8.8e-120 435.3 705 37.4
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.8e-120 435.3 673 39.8
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 2.6e-119 433.7 677 39.7
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 3.3e-119 433.3 678 39.4
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 5.7e-119 432.6 679 38.9
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.8e-118 430.3 608 42.1
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 4.8e-118 429.5 685 39.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 2.4e-117 427.2 648 39.4
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 4.1e-117 426.4 678 37.9
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 6.5e-115 419.1 679 38.9
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.9e-114 417.5 679 38.7
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 7.2e-114 415.6 720 36.8
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 1.2e-113 414.8 690 38.4
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 3.6e-113 413.3 673 37.7
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 6.1e-113 412.5 688 38.4
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 8.0e-113 412.1 684 36.8
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.0e-112 411.8 683 38.9
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 2.3e-112 410.6 685 37.8
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 8.2e-110 402.1 564 41.3
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 8.5e-107 392.1 696 35.9
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.1e-106 391.7 563 41.4
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 1.5e-106 391.3 558 42.1
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.4e-104 384.8 681 36.3
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.4e-104 384.8 691 35.2
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 2.0e-103 380.9 685 34.7
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.7e-102 377.9 681 34.7
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 1.7e-102 377.9 690 35.4
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 2.2e-102 377.5 687 35.8
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 4.8e-102 376.3 685 34.3
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.1e-101 375.2 680 35.1
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.8e-101 374.4 674 36.4
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 1.8e-101 374.4 678 33.8
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 2.4e-101 374.0 672 36.6
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 9.1e-101 372.1 684 36.4
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 5.9e-100 369.4 620 37.3
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 3.8e-99 366.7 588 39.8
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 1.0e-96 358.6 687 35.7
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 3.0e-96 357.1 642 38.0
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 6.8e-96 355.9 716 36.0
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 2.0e-95 354.4 687 34.6
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.8e-94 350.5 684 35.1
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 8.3e-94 349.0 532 39.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 1.2e-92 345.1 684 34.9
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 1.6e-92 344.7 674 34.7
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.6e-92 344.7 675 35.9
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.7e-91 341.3 675 34.4
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 5.0e-91 339.7 716 33.1
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 7.3e-90 335.9 668 34.0
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 1.6e-89 334.7 665 34.4
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 1.4e-88 331.6 684 33.8
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 7.5e-87 325.9 365 47.7
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 4.9e-86 323.2 681 33.9
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 8.3e-86 322.4 661 34.3
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 4.1e-85 320.1 673 33.7
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.3e-83 315.1 683 32.7
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.8e-81 307.4 597 35.8
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 7.5e-79 299.3 671 32.3
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.7e-78 298.1 714 30.5
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 2.2e-78 297.7 499 36.1
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 3.7e-78 297.0 750 32.1
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 5.0e-75 286.6 563 35.3
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 4.3e-74 283.5 666 31.7
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 4.3e-74 283.5 690 32.2
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.1e-72 278.9 690 31.9
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 6.8e-72 276.2 561 33.9
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.6e-68 265.0 433 38.3
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 8.9e-64 249.2 445 34.8
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 2.6e-63 247.7 432 38.4
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 3.4e-63 247.3 699 30.3
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 3.8e-62 243.8 436 36.5
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 4.1e-61 240.4 713 29.2
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.1e-60 238.0 678 29.6
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.8e-54 217.2 322 37.9
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 9.3e-53 212.6 389 33.9
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 2.7e-36 157.9 365 32.9
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.3e-35 155.6 196 46.4
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 1.1e-34 152.5 300 34.3
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.8e-24 118.6 150 45.3
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.9e-21 108.6 141 46.1
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 3.0e-19 101.3 560 23.2
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 5.7e-18 97.1 648 22.8
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.1e-16 92.8 95 49.5
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 2.4e-16 91.7 232 27.6
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.1e-16 91.3 187 32.6
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 5.3e-16 90.5 672 22.9
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 6.9e-16 90.1 391 25.1
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.6e-12 77.8 60 65.0
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.6e-12 77.8 60 65.0
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 3.7e-09 67.8 46 63.0
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 6.3e-09 67.0 70 45.7
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 1.5e-07 62.4 322 23.0
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.5e-07 60.8 196 28.1
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.7e-06 58.9 118 33.1


User provided reference genes

Program Settings