Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 6291.5 3184 100.0
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 3342.0 1788 94.1
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2966.8 3215 50.7
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 2926.0 1846 81.6
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2844.7 3239 48.5
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2809.6 3233 48.3
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2728.0 3287 47.0
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2691.4 2988 49.9
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2687.1 3229 46.5
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 2651.7 1721 78.0
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2628.2 3485 44.0
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2581.6 3283 44.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2575.8 3244 45.3
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2567.0 3231 46.1
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2556.6 3217 44.8
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2541.9 3250 45.5
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2492.6 3270 43.9
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2484.1 3243 44.0
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2475.3 3286 44.2
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2447.9 3246 43.5
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2437.5 3249 44.0
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2437.1 3236 43.5
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2425.6 3202 43.8
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2412.9 3195 43.6
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 2406.7 1339 89.8
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2396.7 3231 43.5
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2391.3 3240 42.8
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2388.2 3274 43.2
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2385.5 3289 43.4
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 2366.7 1580 77.7
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2359.3 3289 43.0
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2358.6 3256 42.6
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2358.6 3176 43.6
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2357.4 3239 42.8
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2342.8 3287 43.0
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2312.3 3263 41.9
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2306.6 3363 41.6
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2293.5 3234 41.8
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2292.3 3249 42.6
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2283.8 3911 37.7
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2281.1 3230 41.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2271.1 3248 41.1
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2261.5 3257 42.0
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2251.1 3304 41.2
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2232.2 2868 44.6
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2226.4 3258 41.5
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2217.2 3265 41.1
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2216.4 2952 43.5
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2216.4 3257 41.1
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2215.3 3254 41.1
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2203.7 3262 40.7
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2203.3 3234 40.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2177.9 3249 40.7
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2172.5 3342 40.6
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2160.2 2098 54.3
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2144.8 3259 40.0
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2133.6 3232 40.3
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2114.7 3265 39.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2102.0 3251 39.6
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2093.2 3258 39.5
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2093.2 3258 39.5
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2078.5 3256 39.1
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2068.5 3235 39.3
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 0.0e+00 2058.1 1171 90.4
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2054.3 3240 39.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2051.2 3252 39.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2047.7 3178 40.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2046.2 3287 38.8
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 2023.4 2846 42.2
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2008.4 3132 39.9
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1973.7 3252 38.3
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1968.4 2927 40.6
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1942.2 3252 38.4
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1916.7 3071 38.7
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1885.2 3304 36.7
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1880.5 2537 42.9
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1859.3 2352 45.2
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1847.8 1269 76.4
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1829.3 1261 75.7
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1816.2 2272 45.2
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1737.2 1105 79.5
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1727.2 1262 71.7
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1708.3 2951 37.5
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1703.3 3275 35.3
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1601.6 3204 34.7
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1583.5 1687 50.1
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1577.4 1377 58.2
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1521.1 1457 52.8
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1511.5 1292 59.7
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1424.1 1802 44.8
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1415.2 1341 54.9
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1335.5 1219 57.2
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1309.7 1356 50.4
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1299.3 1209 56.2
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1209.5 2607 33.7
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1158.3 1902 36.9
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1091.3 1921 35.4
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 0.0e+00 1077.0 2546 31.6
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 1.3e-309 1068.1 1397 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.8e-300 1037.7 1756 35.9
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 4.2e-281 973.4 1319 42.0
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 5.9e-275 953.0 1709 36.4
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 4.4e-246 857.1 597 70.5
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.6e-211 742.3 1865 30.9
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.8e-207 728.8 662 57.9
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 6.9e-207 726.9 1895 30.3
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 4.8e-168 597.8 877 41.5
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.4e-167 596.3 2143 26.5
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.5e-150 538.1 469 58.8
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 9.5e-148 530.4 899 37.7
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.4e-137 495.4 968 34.0
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.7e-128 465.3 908 35.7
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 7.1e-119 434.5 1574 27.3
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 6.6e-117 427.9 977 31.9
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 3.6e-115 422.2 457 47.5
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 3.0e-101 375.9 330 62.4
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 7.1e-95 354.8 938 28.6
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 1.9e-92 346.7 216 76.9
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.3e-88 334.0 807 30.5
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 6.3e-83 315.1 884 28.4
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.4e-81 309.3 983 27.1
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.0e-77 296.2 222 65.8
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.0e-65 256.9 393 42.2
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 8.8e-61 241.5 1231 24.8
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.4e-58 234.2 206 58.3
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 5.3e-58 232.3 235 54.9
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 2.5e-55 223.4 441 34.5
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.2e-51 210.3 153 68.0
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 2.2e-51 210.3 146 69.9
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 2.8e-51 209.9 152 68.4
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 6.3e-51 208.8 151 69.5
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.4e-44 186.4 104 85.6
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-43 183.0 622 26.4
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.6e-41 177.6 681 25.8
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.0e-37 162.9 172 54.1
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 3.8e-32 146.4 208 38.9
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 2.5e-31 143.7 158 45.6
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 2.4e-26 127.1 920 21.5
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 4.1e-26 126.3 182 37.9
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 4.6e-25 122.9 335 27.8
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 6.6e-24 119.0 111 53.2
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 8.6e-24 118.6 73 72.6
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 6.8e-21 109.0 64 82.8
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 1.2e-20 108.2 164 37.2
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 1.7e-19 104.4 506 24.1
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 3.2e-18 100.1 203 31.0
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 1.0e-16 95.1 675 21.9
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-16 94.7 389 22.4
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 6.2e-14 85.9 121 40.5
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 2.3e-13 84.0 120 40.8
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 4.0e-13 83.2 172 28.5
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 8.9e-13 82.0 100 42.0
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 8.9e-13 82.0 102 41.2
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.2e-12 81.6 226 25.7
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 3.4e-12 80.1 229 23.1
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 9.8e-12 78.6 69 58.0
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 1.6e-09 71.2 52 71.2
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 2.1e-09 70.9 56 57.1
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 6.6e-08 65.9 81 43.2
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 2.1e-06 60.8 38 71.1


User provided reference genes

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