Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034820 Solanum pennellii HOM05D008334 ORTHO05D010366 3.0e-44 181.4 88 100.0
PGSC0003DMG400010112 Solanum tuberosum HOM05D008334 ORTHO05D010366 1.0e-36 156.4 92 85.9
Nitab4.5_0001014g0160 Nicotiana tabacum HOM05D008334 ORTHO05D010366 3.7e-26 121.3 101 69.3
CAN.G836.22 Capsicum annuum HOM05D008334 ORTHO05D012551 6.2e-26 120.6 93 72.0
Peaxi162Scf00535g00717 Petunia axillaris HOM05D008334 ORTHO05D010366 6.7e-20 100.5 101 60.4
Nitab4.5_0000108g0210 Nicotiana tabacum HOM05D008334 ORTHO05D010366 2.8e-18 95.1 90 64.4
Sopen02g034810 Solanum pennellii HOM05D033558 ORTHO05D010366 4.5e-16 87.8 76 63.2
Solyc02g090120.1 Solanum lycopersicum HOM05D033558 ORTHO05D010366 1.0e-15 86.7 76 61.8
SGA_v2.0_scaffold15G07210 Striga asiatica HOM05D008334 ORTHO05D010366 1.8e-12 75.9 92 46.7
Migut.H00500 Erythranthe guttata HOM05D008334 ORTHO05D010366 8.8e-12 73.6 94 45.7
CiPaw.01G028200 Carya illinoinensis HOM05D008334 ORTHO05D010366 3.7e-10 68.2 103 44.7
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 1.4e-09 66.2 83 42.2
Medtr5g018540 Medicago truncatula HOM05D008334 ORTHO05D010366 1.4e-09 66.2 102 45.1
TPR.G29861 Trifolium pratense HOM05D008334 ORTHO05D010366 1.8e-09 65.9 103 42.7
Rhsim08G0109000 Rhododendron simsii HOM05D008334 ORTHO05D010366 2.4e-09 65.5 80 46.2
QL06p044185 Quercus lobata HOM05D008334 ORTHO05D010366 6.9e-09 63.9 99 43.4
Cfa004229 Carpinus fangiana HOM05D008334 ORTHO05D010366 9.1e-09 63.5 88 45.5
COL.COLO4_22186 Corchorus olitorius HOM05D008334 ORTHO05D010366 9.1e-09 63.5 80 45.0
Lj2g0004238 Lotus japonicus HOM05D008334 ORTHO05D010366 9.1e-09 63.5 97 42.3
Atru.chr3.465 Acer truncatum HOM05D008334 ORTHO05D010366 1.2e-08 63.2 109 39.4
Gohir.A10G093800 Gossypium hirsutum HOM05D008334 ORTHO05D010366 2.6e-08 62.0 78 43.6
Gohir.D10G094300 Gossypium hirsutum HOM05D008334 ORTHO05D010366 4.5e-08 61.2 78 42.3
Gorai.011G103700 Gossypium raimondii HOM05D008334 ORTHO05D010366 4.5e-08 61.2 78 42.3
Psat0s4220g0080 Pisum sativum HOM05D008334 ORTHO05D010366 4.5e-08 61.2 80 45.0
Haze_15171 Corylus avellana HOM05D008334 ORTHO05D010366 1.0e-07 60.1 104 39.4
BcaB04g20079 Brassica carinata HOM05D010741 ORTHO05D012551 1.3e-07 59.7 88 33.0
BcaC04g23186 Brassica carinata HOM05D010741 ORTHO05D012551 1.3e-07 59.7 88 33.0
Atru.chr3.467 Acer truncatum HOM05D008334 ORTHO05D010366 2.9e-07 58.5 109 38.5
BcaC04g23183 Brassica carinata HOM05D010741 ORTHO05D012551 2.9e-07 58.5 88 33.0
Thecc.01G046100 Theobroma cacao HOM05D008334 ORTHO05D010366 2.9e-07 58.5 82 42.7
Duzib147G0108 Durio zibethinus HOM05D008334 ORTHO05D010366 3.8e-07 58.2 73 45.2
Sabra05G0106400 Salix brachista HOM05D008334 ORTHO05D010366 3.8e-07 58.2 103 34.0
Sp2g29680 Schrenkiella parvula HOM05D010741 ORTHO05D012551 3.8e-07 58.2 90 33.3
Potri.005G131000 Populus trichocarpa HOM05D008334 ORTHO05D010366 6.5e-07 57.4 103 34.0
BcaB02g09964 Brassica carinata HOM05D010741 ORTHO05D012551 8.5e-07 57.0 91 35.2
DCAR_010943 Daucus carota HOM05D008334 ORTHO05D010366 8.5e-07 57.0 91 38.5
CARHR280700 Cardamine hirsuta HOM05D010741 ORTHO05D012551 1.4e-06 56.2 89 30.3
A09p09590 Brassica napus HOM05D010741 ORTHO05D012551 2.5e-06 55.5 88 33.0
Gohir.A11G045200 Gossypium hirsutum HOM05D008334 ORTHO05D010366 2.5e-06 55.5 93 34.4
Gohir.D11G048700 Gossypium hirsutum HOM05D008334 ORTHO05D010366 2.5e-06 55.5 93 34.4
Gorai.007G052300 Gossypium raimondii HOM05D008334 ORTHO05D010366 2.5e-06 55.5 93 34.4
Prupe.7G144900 Prunus persica HOM05D008334 ORTHO05D010366 2.5e-06 55.5 91 36.3
BraA09t36608Z Brassica rapa HOM05D010741 ORTHO05D012551 3.2e-06 55.1 93 38.7
Oeu032927.1 Olea europaea HOM05D008334 ORTHO05D010366 3.2e-06 55.1 94 40.4
BcaC04g23184 Brassica carinata HOM05D010741 ORTHO05D012551 5.5e-06 54.3 92 31.5
C09p11340 Brassica napus HOM05D010741 ORTHO05D012551 5.5e-06 54.3 92 31.5
Glyma.16G144100 Glycine max HOM05D008334 ORTHO05D010366 5.5e-06 54.3 108 38.0
Prupe.7G144800 Prunus persica HOM05D008334 ORTHO05D010366 5.5e-06 54.3 104 34.6
Manes.12G094900 Manihot esculenta HOM05D008334 ORTHO05D010366 9.4e-06 53.5 96 37.5
Manes.13G131800 Manihot esculenta HOM05D008334 ORTHO05D010366 9.4e-06 53.5 100 33.0
Phvul.002G023200 Phaseolus vulgaris HOM05D008334 ORTHO05D010366 9.4e-06 53.5 99 39.4


User provided reference genes

Program Settings