Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 2.1e-45 185.3 90 100.0
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 5.2e-44 180.6 89 97.8
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 2.0e-43 178.7 89 95.5
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 2.6e-43 178.3 89 96.6
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 4.9e-42 174.1 89 94.4
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 8.0e-37 156.8 89 84.3
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 1.3e-31 139.4 90 74.4
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 1.1e-30 136.3 87 74.7
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 1.1e-30 136.3 88 75.0
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 1.5e-30 136.0 89 74.2
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 1.9e-30 135.6 88 73.9
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 1.9e-30 135.6 87 73.6
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 2.5e-30 135.2 87 71.3
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 3.3e-30 134.8 89 69.7
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 3.3e-30 134.8 88 71.6
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 4.3e-30 134.4 86 75.6
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 4.3e-30 134.4 86 75.6
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 4.3e-30 134.4 86 75.6
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 7.3e-30 133.7 88 72.7
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 9.5e-30 133.3 87 72.4
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 9.5e-30 133.3 86 69.8
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 9.5e-30 133.3 88 73.9
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 1.6e-29 132.5 89 68.5
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 2.1e-29 132.1 88 69.3
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 2.8e-29 131.7 88 71.6
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 3.6e-29 131.3 63 98.4
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 6.2e-29 130.6 86 72.1
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 8.1e-29 130.2 88 69.3
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 8.1e-29 130.2 87 69.0
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 8.1e-29 130.2 86 72.1
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 1.4e-28 129.4 86 73.3
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 2.3e-28 128.6 86 70.9
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 2.3e-28 128.6 89 70.8
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 3.1e-28 128.3 87 69.0
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 3.1e-28 128.3 95 66.3
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 3.1e-28 128.3 88 68.2
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 3.1e-28 128.3 84 69.0
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 4.0e-28 127.9 88 68.2
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 5.2e-28 127.5 86 70.9
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 6.8e-28 127.1 90 67.8
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 6.8e-28 127.1 87 72.4
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 6.8e-28 127.1 89 68.5
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 8.9e-28 126.7 96 66.7
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 8.9e-28 126.7 88 70.5
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 8.9e-28 126.7 83 68.7
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 1.2e-27 126.3 83 73.5
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 1.5e-27 125.9 91 67.0
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 1.5e-27 125.9 89 66.3
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 2.0e-27 125.6 87 67.8
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 2.0e-27 125.6 96 64.6
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 2.0e-27 125.6 82 74.4
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.4e-27 124.8 96 65.6
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 3.4e-27 124.8 86 67.4
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 4.4e-27 124.4 87 67.8
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 4.4e-27 124.4 83 72.3
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 5.8e-27 124.0 87 67.8
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 5.8e-27 124.0 88 69.3
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 5.8e-27 124.0 86 67.4
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 7.5e-27 123.6 87 66.7
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 7.5e-27 123.6 87 66.7
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 7.5e-27 123.6 88 64.8
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 7.5e-27 123.6 87 69.0
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 1.3e-26 122.9 84 66.7
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 1.7e-26 122.5 82 69.5
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.7e-26 122.5 87 67.8
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 2.2e-26 122.1 83 68.7
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 2.9e-26 121.7 82 68.3
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 2.9e-26 121.7 82 68.3
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 2.9e-26 121.7 82 70.7
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 3.7e-26 121.3 82 69.5
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 3.7e-26 121.3 86 67.4
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 3.7e-26 121.3 89 65.2
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 4.9e-26 120.9 82 69.5
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 2.4e-25 118.6 89 62.9
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 4.1e-25 117.9 86 64.0
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 4.1e-25 117.9 86 66.3
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 5.4e-25 117.5 87 63.2
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 1.2e-24 116.3 87 65.5
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 1.6e-24 115.9 83 63.9
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 2.1e-24 115.5 77 72.7
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 3.5e-24 114.8 80 66.2
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 7.8e-24 113.6 80 65.0
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 5.1e-23 110.9 87 56.3
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 8.6e-23 110.2 87 57.5
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 5.6e-22 107.5 90 54.4
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 1.2e-21 106.3 83 65.1
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.6e-21 105.9 83 59.0
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 1.6e-21 105.9 90 53.3
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 2.8e-21 105.1 89 52.8
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 2.8e-21 105.1 87 55.2
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 2.8e-21 105.1 87 55.2
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 2.8e-21 105.1 87 55.2
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 2.8e-21 105.1 87 55.2
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 2.8e-21 105.1 87 55.2
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 2.8e-21 105.1 90 54.4
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 3.6e-21 104.8 90 53.3
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 3.6e-21 104.8 75 66.7
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 4.7e-21 104.4 87 55.2
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 4.7e-21 104.4 87 52.9
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 1.1e-20 103.2 87 54.0
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 1.1e-20 103.2 82 54.9
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 5.2e-20 100.9 90 51.1
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 6.8e-20 100.5 83 55.4
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 5.8e-19 97.4 88 46.6
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.3e-18 96.3 88 45.5
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 4.9e-18 94.4 83 55.4
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 1.2e-16 89.7 81 45.7
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 1.7e-15 85.9 84 48.8
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 3.3e-14 81.6 87 43.7
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 2.6e-11 72.0 84 40.5
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 2.2e-10 68.9 76 42.1
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 1.9e-09 65.9 82 34.1
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 1.2e-08 63.2 84 40.5
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 2.7e-08 62.0 80 36.2


User provided reference genes

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