Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034650 Solanum pennellii HOM05D007898 ORTHO05D010010 5.0e-85 317.8 164 100.0
Solyc02g089960.3 Solanum lycopersicum HOM05D007898 ORTHO05D010010 1.2e-78 296.6 164 94.5
PGSC0003DMG400010085 Solanum tuberosum HOM05D007898 ORTHO05D010010 5.3e-71 271.2 167 85.6
CAN.G836.11 Capsicum annuum HOM05D007898 ORTHO05D010010 1.5e-68 263.1 167 82.0
Nitab4.5_0004932g0020 Nicotiana tabacum HOM05D007898 ORTHO05D010010 1.2e-62 243.4 170 76.5
Peaxi162Scf00535g00419 Petunia axillaris HOM05D007898 ORTHO05D010010 2.7e-59 232.3 172 70.3
Nitab4.5_0000483g0020 Nicotiana tabacum HOM05D007898 ORTHO05D010010 3.0e-58 228.8 154 77.3
CSS0004703 Camellia sinensis var. sinensis HOM05D007898 ORTHO05D010010 6.0e-38 161.4 174 54.0
CSS0023760 Camellia sinensis var. sinensis HOM05D007898 ORTHO05D010010 6.0e-38 161.4 173 54.3
Oeu043831.1 Olea europaea HOM05D007898 ORTHO05D010010 6.0e-38 161.4 149 59.7
Hma1.2p1_0261F.1_g104820 Hydrangea macrophylla HOM05D007898 ORTHO05D010010 2.8e-35 152.5 147 59.2
PGR142G0285 Punica granatum HOM05D007898 ORTHO05D010010 8.0e-35 151.0 151 58.3
Eucgr.K01101 Eucalyptus grandis HOM05D007898 ORTHO05D010010 1.8e-34 149.8 161 55.3
Cfa004248 Carpinus fangiana HOM05D007898 ORTHO05D010010 3.1e-34 149.1 158 53.8
GSVIVG01019045001 Vitis vinifera HOM05D007898 ORTHO05D010010 5.2e-34 148.3 155 52.9
TWI73G0930 Tripterygium wilfordii HOM05D007898 ORTHO05D010010 6.8e-34 147.9 147 56.5
TAR381G0528 Trochodendron aralioides HOM05D007898 ORTHO05D010010 1.5e-33 146.7 158 53.2
CiPaw.02G014000 Carya illinoinensis HOM05D007898 ORTHO05D010010 2.0e-33 146.4 156 53.2
FAN23G0801 Fragaria x ananassa HOM05D007898 ORTHO05D010010 2.6e-33 146.0 155 52.9
RcHm_v2.0_Chr2g0103011 Rosa chinensis HOM05D007898 ORTHO05D010010 2.6e-33 146.0 155 53.5
FAN28G1054 Fragaria x ananassa HOM05D007898 ORTHO05D010010 5.8e-33 144.8 155 52.9
Sabra07G0028800 Salix brachista HOM05D007898 ORTHO05D010010 1.7e-32 143.3 161 50.9
FvH4_1g14340 Fragaria vesca HOM05D007898 ORTHO05D010010 2.9e-32 142.5 155 51.6
Migut.K00847 Erythranthe guttata HOM05D007898 ORTHO05D010010 3.7e-32 142.1 151 52.3
QL06p044475 Quercus lobata HOM05D007898 ORTHO05D010010 8.3e-32 141.0 167 49.1
Thecc.01G044100 Theobroma cacao HOM05D007898 ORTHO05D010010 1.4e-31 140.2 157 50.3
arahy.Tifrunner.gnm1.ann1.P18VIJ Arachis hypogaea HOM05D007898 ORTHO05D010010 2.4e-31 139.4 157 52.2
Dinv26786 Davidia involucrata HOM05D007898 ORTHO05D010010 1.2e-30 137.1 127 61.4
Gohir.D04G029100 Gossypium hirsutum HOM05D007898 ORTHO05D010010 7.8e-30 134.4 161 47.2
Potri.007G032900 Populus trichocarpa HOM05D007898 ORTHO05D010010 1.0e-29 134.0 155 50.3
Manes.12G096600 Manihot esculenta HOM05D007898 ORTHO05D010010 1.7e-29 133.3 157 48.4
AT2G23755 Arabidopsis thaliana HOM05D007898 ORTHO05D010010 2.3e-29 132.9 146 51.4
Gohir.D03G018100 Gossypium hirsutum HOM05D007898 ORTHO05D010010 2.3e-29 132.9 161 46.6
Gohir.A02G162400 Gossypium hirsutum HOM05D007898 ORTHO05D010010 3.0e-29 132.5 161 46.0
Gohir.D04G023900 Gossypium hirsutum HOM05D007898 ORTHO05D010010 3.0e-29 132.5 176 45.5
AL4G13750 Arabidopsis lyrata HOM05D007898 ORTHO05D010010 3.9e-29 132.1 151 49.7
CANSAT01G0863 Cannabis sativa HOM05D007898 ORTHO05D010010 3.9e-29 132.1 159 47.8
PSO170G4740 Papaver somniferum HOM05D007898 ORTHO05D010010 3.9e-29 132.1 159 48.4
MD15G1271500 Malus domestica HOM05D007898 ORTHO05D010010 1.1e-28 130.6 158 48.7
Carub.0004s0293 Capsella rubella HOM05D007898 ORTHO05D010010 1.9e-28 129.8 145 51.7
TPR.G31555 Trifolium pratense HOM05D007898 ORTHO05D010010 3.3e-28 129.0 160 48.1
Gorai.012G033200 Gossypium raimondii HOM05D007898 ORTHO05D010010 4.3e-28 128.6 176 43.8
SalBow1G4022 Salvia bowleyana HOM05D007898 ORTHO05D010010 5.6e-28 128.3 148 52.0
THA.LOC104819816 Tarenaya hassleriana HOM05D007898 ORTHO05D010010 7.3e-28 127.9 156 48.1
Lj7P13T39 Lonicera japonica HOM05D007898 ORTHO05D010010 1.6e-27 126.7 137 54.0
Nn1g05126 Nelumbo nucifera HOM05D007898 ORTHO05D010010 1.6e-27 126.7 178 46.6
Prupe.7G146700 Prunus persica HOM05D007898 ORTHO05D010010 2.1e-27 126.3 161 45.3
Gohir.D04G023600 Gossypium hirsutum HOM05D007898 ORTHO05D010010 3.6e-27 125.6 173 43.9
arahy.Tifrunner.gnm1.ann1.376QVY Arachis hypogaea HOM05D007898 ORTHO05D010010 6.2e-27 124.8 125 56.0
CARHR114600 Cardamine hirsuta HOM05D007898 ORTHO05D010010 6.2e-27 124.8 151 49.0
ClCG01G016310 Citrullus lanatus HOM05D007898 ORTHO05D010010 1.4e-26 123.6 163 44.2
Cc07_g05300 Coffea canephora HOM05D007898 ORTHO05D010010 1.4e-26 123.6 156 51.9
Ah.03g142230 Amaranthus hybridus HOM05D007898 ORTHO05D010010 2.3e-26 122.9 151 46.4
MELO3C007502.2 Cucumis melo HOM05D007898 ORTHO05D010010 3.1e-26 122.5 162 45.7
Gohir.A05G386500 Gossypium hirsutum HOM05D007898 ORTHO05D010010 3.1e-26 122.5 160 45.0
CsaV3_6G042630 Cucumis sativus L. HOM05D007898 ORTHO05D010010 5.2e-26 121.7 164 45.1
Sed0027812 Sechium edule HOM05D007898 ORTHO05D010010 1.5e-25 120.2 161 45.3
FAN26G2880 Fragaria x ananassa HOM05D007898 ORTHO05D010010 8.3e-24 114.4 132 48.5
ATR0053G039 Amborella trichopoda HOM05D007898 ORTHO05D010010 5.4e-23 111.7 150 45.3
AUR62008035 Chenopodium quinoa HOM05D007898 ORTHO05D010010 5.4e-23 111.7 128 50.0
Thhalv10000478m.g Eutrema salsugineum HOM05D007898 ORTHO05D010010 5.4e-23 111.7 183 40.4
SGA_v2.0_scaffold62G21534 Striga asiatica HOM05D007898 ORTHO05D010010 3.5e-22 109.0 127 48.8
Ciclev10027359m.g Citrus clementina HOM05D007898 ORTHO05D010010 4.6e-22 108.6 126 46.8
CDE02G3439 Ceratophyllum demersum HOM05D007898 ORTHO05D010010 5.1e-21 105.1 148 44.6
Gorai.003G018300 Gossypium raimondii HOM05D007898 ORTHO05D010010 1.5e-20 103.6 165 41.2
SHI08702 Sapria himalayana HOM05D007898 ORTHO05D010010 1.5e-20 103.6 110 50.9
AUR62003213 Chenopodium quinoa HOM05D007898 ORTHO05D010010 3.3e-20 102.4 123 47.2
Hund14127 Selenicereus undatus HOM05D007898 ORTHO05D010010 3.6e-19 99.0 159 40.3
EL10Ac6g14865 Beta vulgaris HOM05D007898 ORTHO05D010010 8.1e-19 97.8 130 47.7
A09p56800 Brassica napus HOM05D007898 ORTHO05D010010 1.4e-18 97.1 132 43.9
Actinidia30992 Actinidia chinensis HOM05D007898 ORTHO05D010010 6.8e-18 94.7 151 42.4
BolC8t51548H Brassica oleracea HOM05D007898 ORTHO05D010010 1.5e-17 93.6 132 43.9
C08p39760 Brassica napus HOM05D007898 ORTHO05D010010 2.0e-17 93.2 132 43.2
BraA09t41069Z Brassica rapa HOM05D007898 ORTHO05D010010 4.9e-16 88.6 93 50.5
SEGI_13764 Sequoiadendron giganteum HOM05D007898 ORTHO05D010010 4.9e-16 88.6 137 41.6
Lj4g0012479 Lotus japonicus HOM05D007898 ORTHO05D010010 4.2e-15 85.5 107 47.7
FAN19G2518 Fragaria x ananassa HOM05D007898 ORTHO05D010010 4.6e-14 82.0 93 48.4
TAR374G1689 Trochodendron aralioides HOM05D007898 ORTHO05D010010 3.9e-13 79.0 80 56.2
Haze_15152 Corylus avellana HOM05D007898 ORTHO05D010010 3.6e-11 72.4 153 37.3
CDE02G3192 Ceratophyllum demersum HOM05D007898 ORTHO05D010010 4.0e-10 68.9 104 43.3


User provided reference genes

Program Settings