Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 2.2e-207 725.3 356 100.0
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 3.4e-203 711.4 354 98.0
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.6e-189 666.0 354 92.7
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 1.1e-142 510.4 299 83.6
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 5.3e-140 501.5 329 75.7
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 6.7e-135 484.6 354 70.9
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 2.1e-125 453.0 335 69.0
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 6.9e-116 421.4 353 59.8
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.0e-114 415.2 329 61.4
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 5.0e-114 415.2 351 58.1
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 5.0e-114 415.2 329 63.2
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 3.6e-112 409.1 366 56.6
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.0e-111 407.5 308 63.3
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 1.1e-110 404.1 359 56.8
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 4.8e-109 398.7 354 56.2
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 8.2e-109 397.9 338 58.9
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 1.1e-108 397.5 355 55.8
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 1.4e-108 397.1 331 58.9
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 4.1e-108 395.6 322 61.2
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 6.9e-108 394.8 329 58.4
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 1.2e-107 394.0 315 60.3
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 3.4e-107 392.5 308 61.4
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 5.0e-106 388.7 297 63.6
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 8.5e-106 387.9 309 61.2
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 1.4e-105 387.1 350 54.9
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 2.5e-105 386.3 363 54.8
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 9.4e-105 384.4 352 54.3
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 3.9e-103 379.0 305 61.0
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.1e-102 377.5 308 58.1
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.1e-102 377.5 354 53.7
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 2.0e-102 376.7 313 60.1
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 2.6e-102 376.3 311 58.2
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 4.4e-102 375.6 337 57.6
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 5.7e-102 375.2 360 52.2
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 1.3e-101 374.0 351 51.9
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 1.7e-101 373.6 315 56.8
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 2.2e-101 373.2 304 60.2
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 3.7e-101 372.5 351 54.1
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 1.4e-100 370.5 316 56.6
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 5.3e-100 368.6 310 58.4
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 9.1e-100 367.9 357 52.7
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 5.9e-99 365.2 304 57.2
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 1.0e-98 364.4 303 56.4
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.7e-98 363.6 300 58.7
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 1.7e-98 363.6 300 56.7
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 5.0e-98 362.1 367 51.8
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 8.5e-98 361.3 347 52.7
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.5e-97 360.5 348 52.3
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 1.9e-97 360.1 355 52.7
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.9e-97 360.1 325 56.9
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 3.2e-97 359.4 359 51.5
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 5.5e-97 358.6 304 56.6
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 2.1e-96 356.7 315 55.2
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 2.7e-96 356.3 305 55.4
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 3.6e-96 355.9 300 57.3
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 8.0e-96 354.8 357 52.4
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 8.0e-96 354.8 328 51.8
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 1.4e-95 354.0 315 55.6
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 1.8e-95 353.6 303 58.4
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.8e-95 353.6 319 53.3
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.8e-95 353.6 315 55.6
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 4.0e-95 352.4 297 56.6
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 6.7e-95 351.7 302 59.3
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 6.7e-95 351.7 310 54.2
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 6.7e-95 351.7 331 52.3
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 8.8e-95 351.3 333 54.1
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 2.0e-94 350.1 322 52.2
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 2.6e-94 349.7 245 67.8
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 5.7e-94 348.6 352 51.1
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 2.2e-93 346.7 299 55.2
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 2.2e-93 346.7 363 49.9
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 2.8e-93 346.3 311 54.3
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 6.3e-93 345.1 310 53.5
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 1.8e-92 343.6 312 56.7
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 4.1e-92 342.4 310 53.5
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 9.1e-92 341.3 315 53.0
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.5e-89 334.0 276 58.7
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.5e-89 333.2 322 54.7
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 3.2e-89 332.8 300 54.0
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 2.1e-88 330.1 281 55.9
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.4e-87 327.4 300 54.0
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 1.8e-87 327.0 302 52.0
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 1.2e-86 324.3 279 55.9
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.6e-86 323.2 297 52.9
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 4.4e-86 322.4 345 47.2
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 5.7e-86 322.0 310 52.9
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.3e-85 320.9 304 54.3
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 1.6e-83 313.9 330 51.2
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 2.7e-83 313.2 248 59.7
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 2.1e-80 303.5 241 62.7
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 1.8e-79 300.4 298 51.3
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.5e-78 295.0 272 53.3
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 9.8e-78 294.7 272 52.9
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 2.8e-77 293.1 354 45.8
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 4.5e-75 285.8 434 38.5
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 1.2e-67 261.2 307 48.9
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.1e-65 254.6 191 64.4
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 4.0e-63 246.1 303 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 3.7e-61 239.6 308 45.5
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 6.6e-58 228.8 217 54.8
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 3.6e-56 223.0 303 42.6
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 3.2e-52 209.9 310 40.6
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.5e-49 201.1 288 38.5
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 1.5e-49 201.1 347 38.0
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 4.9e-45 186.0 168 56.5
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 8.1e-40 168.7 405 32.8
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 2.9e-29 133.7 240 36.2
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.1e-28 131.7 175 43.4
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.1e-28 131.7 325 32.3
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 2.7e-27 127.1 109 56.0
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 1.5e-22 111.3 105 51.4
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.4e-22 110.2 130 46.9
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 6.0e-19 99.4 136 40.4
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 8.4e-13 79.0 64 60.9
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 5.9e-06 56.2 51 56.9


User provided reference genes

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