Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 5.5e-144 514.6 323 100.0
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 2.9e-137 492.3 333 82.6
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.2e-127 460.3 334 79.6
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 8.2e-100 367.9 371 61.5
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.7e-97 360.1 335 66.6
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 5.5e-96 355.1 335 64.2
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 6.1e-87 325.1 333 64.3
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 5.4e-67 258.8 292 56.2
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 8.1e-63 245.0 292 54.1
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 1.2e-61 241.1 292 54.1
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.3e-60 237.7 309 53.1
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 9.2e-51 204.9 176 61.9
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 5.1e-49 199.1 154 64.3
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 1.9e-48 197.2 176 59.1
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 5.6e-48 195.7 158 61.4
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.6e-47 194.1 210 53.8
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 2.4e-46 190.3 211 51.7
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 3.1e-46 189.9 338 42.6
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 3.1e-46 189.9 188 53.7
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 9.0e-46 188.3 224 52.7
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 9.0e-46 188.3 183 53.0
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.2e-45 188.0 151 63.6
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.2e-45 188.0 367 38.7
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 2.0e-45 187.2 149 62.4
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 3.4e-45 186.4 325 43.4
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 5.8e-45 185.7 188 55.9
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 7.6e-45 185.3 151 62.9
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 7.6e-45 185.3 177 68.4
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 4.9e-44 182.6 230 48.3
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 4.9e-44 182.6 221 48.0
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 4.9e-44 182.6 145 65.5
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 4.9e-44 182.6 157 59.9
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 4.9e-44 182.6 212 61.8
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 8.4e-44 181.8 224 48.7
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 1.4e-43 181.0 155 73.5
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 1.4e-43 181.0 156 60.3
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 1.9e-43 180.6 195 51.8
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 2.4e-43 180.3 153 69.9
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 2.4e-43 180.3 151 58.9
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 2.4e-43 180.3 176 56.2
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 3.2e-43 179.9 223 52.0
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 3.2e-43 179.9 152 61.8
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.2e-43 179.9 176 67.0
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 3.2e-43 179.9 151 64.2
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 4.2e-43 179.5 152 61.8
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 4.2e-43 179.5 185 52.4
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 4.2e-43 179.5 179 53.1
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 7.1e-43 178.7 185 51.4
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 9.3e-43 178.3 185 50.8
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 9.3e-43 178.3 207 52.2
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 9.3e-43 178.3 157 57.3
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.2e-42 177.9 226 44.7
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 2.7e-42 176.8 347 39.2
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 3.5e-42 176.4 339 43.7
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.0e-41 174.9 344 38.7
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.0e-41 174.9 207 51.2
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 1.3e-41 174.5 192 57.3
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.3e-41 174.5 207 50.7
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 3.0e-41 173.3 338 37.3
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 3.0e-41 173.3 204 48.0
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 5.1e-41 172.6 225 46.7
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 5.1e-41 172.6 157 69.4
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 6.6e-41 172.2 228 46.5
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 6.6e-41 172.2 218 46.8
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 8.7e-41 171.8 176 64.8
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.1e-40 171.4 132 65.9
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 1.1e-40 171.4 183 54.6
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 1.5e-40 171.0 150 58.7
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 1.5e-40 171.0 151 58.3
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.5e-40 171.0 150 58.7
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 1.5e-40 171.0 150 58.7
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.5e-40 171.0 150 58.7
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.5e-40 171.0 189 50.8
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.5e-40 171.0 222 46.4
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.5e-40 171.0 222 46.4
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.3e-40 169.9 199 48.7
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 3.3e-40 169.9 188 52.1
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 7.3e-40 168.7 224 47.8
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 9.6e-40 168.3 355 37.2
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 1.6e-39 167.5 212 48.1
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 2.1e-39 167.2 303 39.6
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 3.6e-39 166.4 149 55.7
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 4.8e-39 166.0 339 38.1
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 8.1e-39 165.2 142 63.4
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 1.1e-38 164.9 134 63.4
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.4e-38 164.5 339 37.8
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 1.8e-38 164.1 322 40.1
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.8e-38 164.1 320 37.2
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.8e-38 164.1 326 37.7
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 6.9e-38 162.2 134 58.2
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 6.9e-38 162.2 140 60.0
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 9.0e-38 161.8 209 48.3
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 1.2e-37 161.4 132 62.9
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 1.2e-37 161.4 133 61.7
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 2.0e-37 160.6 235 43.8
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 2.0e-37 160.6 314 43.6
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 2.6e-37 160.2 183 50.3
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 3.4e-37 159.8 224 43.8
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 5.8e-37 159.1 188 47.9
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 5.8e-37 159.1 151 58.3
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 6.4e-36 155.6 331 35.6
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 1.1e-35 154.8 320 36.2
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 1.1e-35 154.8 189 50.3
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 1.1e-35 154.8 189 50.3
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.4e-35 154.5 321 39.3
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 1.4e-35 154.5 154 60.4
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 4.2e-35 152.9 151 51.0
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.2e-34 151.4 319 36.4
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 1.2e-34 151.4 224 48.2
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 3.5e-34 149.8 328 35.4
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.8e-33 147.5 246 39.4
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 6.7e-33 145.6 170 51.2
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.5e-32 144.4 158 49.4
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.5e-32 144.4 158 49.4
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 5.6e-32 142.5 144 54.9
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 1.3e-31 141.4 345 36.2
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.6e-31 141.0 363 35.5
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 6.2e-31 139.0 197 42.6
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 8.1e-31 138.7 134 54.5
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 6.9e-30 135.6 375 33.1
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 2.2e-28 130.6 132 52.3
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.1e-27 128.3 135 47.4
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 1.4e-27 127.9 136 53.7
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 5.5e-27 125.9 138 47.8
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.2e-26 124.8 147 44.9
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 7.9e-26 122.1 132 52.3
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.9e-26 122.1 158 46.2
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.1e-23 114.0 79 77.2
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 2.8e-23 113.6 132 43.2
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 5.3e-22 109.4 165 43.0
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.0e-17 95.1 252 30.6
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 1.5e-16 91.3 136 47.1
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.7e-15 86.7 95 46.3
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 3.1e-14 83.6 178 32.6
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 9.0e-14 82.0 89 49.4
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 9.0e-14 82.0 117 42.7
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 1.5e-13 81.3 133 34.6
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 2.6e-13 80.5 55 63.6
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.1e-11 75.1 135 34.1
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 1.6e-10 71.2 42 83.3
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 1.7e-07 61.2 180 28.3


User provided reference genes

Program Settings