Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 2.7e-123 445.3 217 100.0
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 5.1e-122 441.0 217 99.1
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 2.8e-120 435.3 217 97.7
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 7.2e-116 420.6 217 94.0
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.7e-115 417.9 217 92.2
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.8e-114 416.0 217 91.2
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.2e-112 409.1 217 90.8
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 2.3e-98 362.5 213 76.1
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 2.3e-98 362.5 217 75.6
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 8.3e-96 354.0 210 75.7
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 9.2e-95 350.5 211 73.0
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 3.5e-94 348.6 207 76.3
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.0e-93 347.1 212 72.6
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.0e-93 347.1 210 73.8
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.7e-93 346.3 207 73.4
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 2.3e-93 345.9 210 72.4
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 2.9e-93 345.5 213 72.8
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 3.8e-93 345.1 208 74.0
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 3.8e-93 345.1 210 72.4
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 6.6e-93 344.4 212 70.8
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.5e-92 343.2 212 72.2
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.5e-92 343.2 213 74.2
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.3e-92 342.0 210 71.9
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 3.3e-92 342.0 210 71.9
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.3e-92 341.7 212 71.2
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 4.3e-92 341.7 212 71.7
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 5.6e-92 341.3 213 70.4
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 9.5e-92 340.5 213 70.4
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.6e-91 339.7 207 73.9
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.7e-91 338.2 210 71.0
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 6.1e-91 337.8 211 73.5
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.8e-90 336.3 208 71.6
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.3e-90 335.9 213 68.5
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 2.3e-90 335.9 210 70.5
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 8.9e-90 334.0 213 70.4
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.0e-89 332.8 207 73.4
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 2.0e-89 332.8 208 73.6
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 3.4e-89 332.0 213 70.4
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 4.4e-89 331.6 209 71.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 2.9e-88 328.9 214 69.6
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.9e-88 328.2 213 69.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.4e-87 326.6 213 69.0
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 4.1e-87 325.1 213 69.0
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 3.5e-86 322.0 212 67.9
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.6e-86 321.6 241 63.5
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 5.9e-86 321.2 212 67.9
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 5.9e-86 321.2 212 67.9
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 7.8e-86 320.9 213 66.7
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.3e-85 319.3 208 70.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 2.3e-85 319.3 210 68.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 3.0e-85 318.9 207 69.6
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 5.0e-85 318.2 208 69.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 5.0e-85 318.2 206 69.9
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 8.6e-85 317.4 208 68.8
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.1e-84 317.0 212 66.0
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.1e-84 317.0 212 68.4
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.5e-84 316.6 208 69.2
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.9e-84 316.2 212 66.5
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.3e-84 315.5 213 68.1
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 3.3e-84 315.5 211 69.2
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 4.3e-84 315.1 207 68.1
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 7.3e-84 314.3 212 66.0
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.2e-83 313.5 211 68.2
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.2e-83 313.5 207 66.2
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.6e-83 313.2 212 66.0
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 2.8e-83 312.4 211 67.3
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 3.6e-83 312.0 213 66.7
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 6.2e-83 311.2 208 68.8
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.0e-82 310.5 211 65.4
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.0e-82 310.5 210 66.7
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.4e-82 310.1 210 67.1
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.8e-82 309.7 210 67.1
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.8e-82 309.7 210 67.1
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 2.3e-82 309.3 207 67.1
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 2.3e-82 309.3 212 66.5
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 3.1e-82 308.9 210 66.2
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 4.0e-82 308.5 212 65.1
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 5.2e-82 308.1 206 66.0
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 6.8e-82 307.8 210 65.2
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 8.9e-82 307.4 211 66.4
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.0e-81 306.2 209 63.2
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.6e-81 305.8 206 68.0
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.7e-80 303.1 207 65.2
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 1.7e-80 303.1 211 63.5
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 2.2e-80 302.8 211 64.0
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.2e-80 302.8 206 64.6
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.2e-80 302.8 213 64.3
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.1e-79 300.4 213 63.4
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.9e-79 299.7 213 62.4
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 3.2e-79 298.9 207 64.3
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 7.0e-79 297.7 206 64.1
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 2.0e-78 296.2 213 64.8
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.5e-78 295.4 212 64.2
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.3e-77 293.5 212 64.2
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.3e-76 288.5 207 62.3
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.6e-76 288.1 194 69.1
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-75 287.0 220 60.5
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.6e-75 285.4 193 66.3
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.2e-74 281.6 201 65.2
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.2e-73 280.4 194 69.1
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.0e-73 279.6 211 62.6
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.7e-72 275.4 204 59.3
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 6.4e-72 274.6 207 56.5
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.4e-71 273.5 215 59.5
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 9.2e-71 270.8 173 71.7
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 1.1e-68 263.8 183 66.7
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.6e-67 260.0 204 57.4
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 8.9e-66 254.2 207 54.1
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 2.2e-64 249.6 199 59.3
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.1e-63 245.4 199 58.3
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 9.2e-63 244.2 140 76.4
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.7e-62 242.7 212 50.0
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.6e-61 237.7 163 66.3
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 7.6e-57 224.6 141 70.2
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 9.9e-57 224.2 193 54.9
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.3e-56 223.8 140 69.3
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 6.4e-56 221.5 210 51.0
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.4e-55 220.3 210 51.0
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 9.3e-55 217.6 127 74.8
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.7e-53 211.1 211 49.8
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.5e-52 210.3 126 74.6
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 3.1e-50 202.6 173 53.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 5.3e-50 201.8 199 51.8
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.2e-48 196.4 207 45.4
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.4e-48 194.9 233 46.4
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-42 177.6 163 51.5
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-36 157.5 110 64.5
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.9e-36 156.8 205 41.0
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 4.8e-35 152.1 110 61.8
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.8e-29 133.7 230 37.4
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.7e-29 131.7 138 52.9
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 2.5e-28 129.8 78 67.9
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 4.3e-28 129.0 204 35.3
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.8e-27 126.3 76 78.9
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 8.5e-24 114.8 209 33.0
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.2e-23 112.5 73 69.9
Cfa022693 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.2e-19 100.1 216 30.1
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.8e-18 97.1 114 44.7
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.8e-18 97.1 114 44.7
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 9.1e-18 94.7 63 61.9
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-17 94.4 114 43.0
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.2e-16 90.1 211 28.9
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 6.5e-16 88.6 210 27.1
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 5.5e-15 85.5 180 29.4
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 5.5e-15 85.5 212 28.8
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.8e-13 80.5 108 43.5
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.0e-12 77.0 124 37.9
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.6e-12 76.6 42 71.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.7e-11 73.9 43 72.1
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 6.9e-10 68.6 47 63.8
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 3.4e-09 66.2 40 67.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 2.9e-08 63.2 82 40.2
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 8.5e-08 61.6 82 39.0
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 2.5e-07 60.1 145 27.6
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 3.6e-06 56.2 30 86.7


User provided reference genes

Program Settings