Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 2.5e-68 261.9 127 100.0
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 1.4e-66 256.1 124 99.2
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 2.3e-66 255.4 127 96.9
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 7.1e-63 243.8 122 95.9
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 2.9e-56 221.9 128 82.0
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 3.8e-56 221.5 127 80.3
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 8.7e-53 210.3 127 75.6
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.1e-52 209.9 127 75.6
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 5.6e-52 207.6 127 77.2
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 2.8e-51 205.3 127 77.2
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 4.7e-51 204.5 127 74.0
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 6.2e-51 204.1 127 74.0
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 1.1e-50 203.4 129 76.7
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 5.2e-50 201.1 126 73.0
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.2e-49 199.9 122 77.0
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 1.3e-48 196.4 127 69.3
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 1.3e-48 196.4 127 71.7
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 4.9e-48 194.5 128 73.4
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 3.2e-47 191.8 120 71.7
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 7.1e-47 190.7 127 70.1
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 7.1e-47 190.7 126 69.8
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 7.1e-47 190.7 126 69.8
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 7.1e-47 190.7 126 69.8
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 7.1e-47 190.7 123 71.5
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 7.1e-47 190.7 122 72.1
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 9.3e-47 190.3 124 71.0
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 9.3e-47 190.3 124 71.0
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 1.6e-46 189.5 128 71.9
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.6e-46 189.5 128 73.4
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 4.6e-46 188.0 127 70.9
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 6.0e-46 187.6 127 70.1
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 1.0e-45 186.8 128 71.9
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 2.3e-45 185.7 126 67.5
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 5.1e-45 184.5 127 67.7
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 1.1e-44 183.3 127 66.9
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 1.1e-44 183.3 121 71.9
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 3.3e-44 181.8 125 68.8
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 9.6e-44 180.3 127 68.5
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 2.1e-43 179.1 125 68.8
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 4.8e-43 177.9 127 66.1
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 6.2e-43 177.6 125 67.2
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 8.1e-43 177.2 125 64.8
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 2.4e-42 175.6 125 64.8
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 2.4e-42 175.6 125 67.2
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 3.1e-42 175.3 124 63.7
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 4.0e-42 174.9 127 63.8
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 5.3e-42 174.5 127 64.6
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 9.0e-42 173.7 127 64.6
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 1.2e-41 173.3 125 66.4
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 1.5e-41 172.9 125 66.4
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 2.0e-41 172.6 124 63.7
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 3.4e-41 171.8 123 67.5
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 9.9e-41 170.2 125 64.8
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 9.9e-41 170.2 124 64.5
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 1.3e-40 169.9 125 63.2
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 1.3e-40 169.9 128 64.8
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 1.7e-40 169.5 125 62.4
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 1.7e-40 169.5 123 64.2
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 3.8e-40 168.3 127 60.6
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 3.8e-40 168.3 127 60.6
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 4.9e-40 167.9 125 60.8
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 1.1e-39 166.8 120 65.0
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 1.4e-39 166.4 122 63.9
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 2.4e-39 165.6 120 63.3
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 3.2e-39 165.2 126 61.9
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 3.2e-39 165.2 128 68.0
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 5.4e-39 164.5 125 60.8
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 5.4e-39 164.5 125 60.8
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 5.4e-39 164.5 125 60.8
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 5.4e-39 164.5 125 60.8
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 5.4e-39 164.5 123 64.2
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 5.4e-39 164.5 127 62.2
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 5.4e-39 164.5 124 63.7
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 7.1e-39 164.1 125 60.8
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 7.1e-39 164.1 127 60.6
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 1.2e-38 163.3 130 57.7
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 1.6e-38 162.9 125 60.0
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 2.1e-38 162.5 123 61.8
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 2.1e-38 162.5 127 63.0
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 2.7e-38 162.2 125 59.2
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 3.5e-38 161.8 128 58.6
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 7.9e-38 160.6 124 61.3
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 7.9e-38 160.6 123 61.8
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 7.9e-38 160.6 126 60.3
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 1.0e-37 160.2 128 57.8
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 1.0e-37 160.2 126 58.7
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 1.8e-37 159.5 127 59.1
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 1.8e-37 159.5 127 60.6
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 2.3e-37 159.1 124 61.3
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 3.0e-37 158.7 127 59.8
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 3.0e-37 158.7 127 59.1
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 3.0e-37 158.7 125 63.2
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 3.9e-37 158.3 125 59.2
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 3.9e-37 158.3 124 60.5
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 3.9e-37 158.3 122 63.1
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 5.1e-37 157.9 125 59.2
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 6.7e-37 157.5 128 57.0
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 8.7e-37 157.1 125 59.2
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 8.7e-37 157.1 125 59.2
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 1.1e-36 156.8 126 57.9
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 1.1e-36 156.8 124 60.5
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 1.9e-36 156.0 124 60.5
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 1.9e-36 156.0 129 56.6
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 5.6e-36 154.5 122 61.5
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 9.6e-36 153.7 121 62.0
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.6e-35 152.9 127 58.3
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 3.7e-35 151.8 103 66.0
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 4.8e-35 151.4 126 57.1
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 1.1e-34 150.2 126 59.5
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 2.9e-32 142.1 127 52.8
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 2.9e-32 142.1 127 55.9
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 4.9e-32 141.4 120 56.7
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.2e-31 138.3 127 54.3
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 4.3e-28 128.3 80 70.0
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 4.8e-27 124.8 127 51.2
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 8.2e-27 124.0 94 59.6
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 1.4e-26 123.2 127 51.2
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 2.4e-26 122.5 96 62.5
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 1.2e-25 120.2 81 63.0
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 3.4e-25 118.6 127 50.4
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.7e-24 116.3 79 69.6
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 4.6e-22 108.2 67 68.7
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 1.5e-17 93.2 121 44.6
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 1.3e-16 90.1 127 38.6
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 1.7e-16 89.7 125 39.2
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 3.8e-16 88.6 127 36.2
BcaB01g05638 Brassica carinata HOM05D005465 ORTHO05D006612 1.1e-15 87.0 72 59.7
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 1.6e-14 83.2 70 54.3
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 2.7e-14 82.4 124 41.9
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 7.9e-14 80.9 90 44.4
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 5.1e-13 78.2 66 48.5
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 8.8e-13 77.4 64 51.6
Sopen02g033680 Solanum pennellii HOM05D005465 ORTHO05D006612 8.2e-11 70.9 36 91.7
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 1.4e-10 70.1 127 34.6
Pp3c16_5680 Physcomitrium patens HOM05D005465 ORTHO05D006612 1.8e-10 69.7 74 41.9
Lsat_1_v5_gn_4_50580 Lactuca sativa HOM05D005465 ORTHO05D006612 2.6e-09 65.9 51 64.7
Cre12.g484700 Chlamydomonas reinhardtii HOM05D005465 ORTHO05D006612 3.4e-09 65.5 95 37.9
MCO16G501 Micromonas commoda HOM05D005465 ORTHO05D006612 2.5e-07 59.3 62 37.1
SGA_v2.0_scaffold187G40263 Striga asiatica HOM05D005465 ORTHO05D006612 5.5e-07 58.2 102 34.3
PRCOL_00003291 Prasinoderma coloniale HOM05D005465 ORTHO05D006612 6.1e-06 54.7 69 42.0


User provided reference genes

Program Settings